AT4G21300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G63370.1); Has 56339 Blast hits to 14414 proteins in 284 species: Archae - 1; Bacteria - 9; Metazoa - 94; Fungi - 190; Plants - 55188; Viruses - 0; Other Eukaryotes - 857 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11336479..11339052 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95746.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSISSVAKRF APAIAPYKKS LPLRNSSRFL EETIPRRLSL LLQACSNPNL LRQGKQVHAF LIVNSISGDS YTDERILGMY AMCGSFSDCG KMFYRLDLRR 101: SSIRPWNSII SSFVRNGLLN QALAFYFKML CFGVSPDVST FPCLVKACVA LKNFKGIDFL SDTVSSLGMD CNEFVASSLI KAYLEYGKID VPSKLFDRVL 201: QKDCVIWNVM LNGYAKCGAL DSVIKGFSVM RMDQISPNAV TFDCVLSVCA SKLLIDLGVQ LHGLVVVSGV DFEGSIKNSL LSMYSKCGRF DDASKLFRMM 301: SRADTVTWNC MISGYVQSGL MEESLTFFYE MISSGVLPDA ITFSSLLPSV SKFENLEYCK QIHCYIMRHS ISLDIFLTSA LIDAYFKCRG VSMAQNIFSQ 401: CNSVDVVVFT AMISGYLHNG LYIDSLEMFR WLVKVKISPN EITLVSILPV IGILLALKLG RELHGFIIKK GFDNRCNIGC AVIDMYAKCG RMNLAYEIFE 501: RLSKRDIVSW NSMITRCAQS DNPSAAIDIF RQMGVSGICY DCVSISAALS ACANLPSESF GKAIHGFMIK HSLASDVYSE STLIDMYAKC GNLKAAMNVF 601: KTMKEKNIVS WNSIIAACGN HGKLKDSLCL FHEMVEKSGI RPDQITFLEI ISSCCHVGDV DEGVRFFRSM TEDYGIQPQQ EHYACVVDLF GRAGRLTEAY 701: ETVKSMPFPP DAGVWGTLLG ACRLHKNVEL AEVASSKLMD LDPSNSGYYV LISNAHANAR EWESVTKVRS LMKEREVQKI PGYSWIEINK RTHLFVSGDV 801: NHPESSHIYS LLNSLLGELR LEGYIPQPYL PLHPESSRKV YPVSRFIEKE MRDPDKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)