AT4G21170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 7405 Blast hits to 3644 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 7339; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11286756..11288513 | ||||||||||||
| Molecular Weight (calculated) | 63230.30 Da | ||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||
| Length | 551 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLIHTSVGF FKRFSTSATP STSSASDWKT QQTLFRVATE ISSILLQRRN WITHLQYVKS KLPRSTLTSP VFLQILRETR KCPKTTLDFF DFAKTHLRFE 101: PDLKSHCRVI EVAAESGLLE RAEMLLRPLV ETNSVSLVVG EMHRWFEGEV SLSVSLSLVL EYYALKGSHH NGLEVFGFMR RLRLSPSQSA YNSLLGSLVK 201: ENQFRVALCL YSAMVRNGIV SDELTWDLIA QILCEQGRSK SVFKLMETGV ESCKIYTNLV ECYSRNGEFD AVFSLIHEMD DKKLELSFCS YGCVLDDACR 301: LGDAEFIDKV LCLMVEKKFV TLGDSAVNDK IIERLCDMGK TFASEMLFRK ACNGETVRLW DSTYGCMLKA LSRKKRTKEA VDVYRMICRK GITVLDESCY 401: IEFANALCRD DNSSEEEEEL LVDVIKRGKE DGNPQRSFLI RLWKWRSGKL EKALVLHEKI KKMKGSLDVN AYNAVLDRLM MRQKEMVEEA VVVFEYMKEI 501: NSVNSKSFTI MIQGLCRVKE MKKAMRSHDE MLRLGLKPDL VTYKRLILGF K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)