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AT4G21110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : G10 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5132eggNOG:KOG3404EMBL:AF410327EMBL:AL021960
EMBL:AL161554EMBL:BT000541EMBL:CP002687EnsemblPlants:AT4G21110
EnsemblPlants:AT4G21110.1entrez:827859GeneID:827859GO:GO:0005634
GO:GO:0005829Gramene:AT4G21110.1hmmpanther:PTHR19411hmmpanther:PTHR19411:SF2
HOGENOM:HOG000235066InterPro:IPR001748InterPro:IPR018230KEGG:ath:AT4G21110
KO:K12873OMA:CRGCSSDPANTHER:PTHR19411Pfam:PF01125
PhylomeDB:O49553PIR:T04942PRINTS:PR00322PROSITE:PS00997
Proteomes:UP000006548RefSeq:NP_193843.1scanprosite:PS00997SMR:O49553
STRING:3702.AT4G21110.1TAIR:AT4G21110UniGene:At.2072UniProt:O49553
Coordinates (TAIR10) chr4:+:11267673..11268774
Molecular Weight (calculated) 17187.60 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.83
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKVKTNRVK YPEGWELIEP TLRELDAKMR EAETDSHDGK RKCETLWPIF KVSHQRSRYV YDLYYRREEI SKELYEFCLD QGYADRSLIA KWKKSGYERL
101: CCLRCIQPRD HNYGTTCVCR VPKHLREEKV VECVHCGCQG CASGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)