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AT4G21050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger domain-containing protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21040.1); Has 1074 Blast hits to 1069 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
DNASU:827852EMBL:AB493689EMBL:AL080282EMBL:AL161554
EMBL:CP002687EnsemblPlants:AT4G21050EnsemblPlants:AT4G21050.1entrez:827852
GeneID:827852Genevisible:Q9SUA9GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010154
GO:GO:0045893GO:GO:0046872GO:GO:2000032Gramene:AT4G21050.1
hmmpanther:PTHR31992HOGENOM:HOG000097076InParanoid:Q9SUA9InterPro:IPR003851
KEGG:ath:AT4G21050OMA:ELHGVTNPaxDb:Q9SUA9Pfam:PF02701
Pfam:Q9SUA9Pfscan:PS50884PhylomeDB:Q9SUA9PIR:T10647
PRIDE:Q9SUA9PRO:PR:Q9SUA9ProDom:PD007478PROSITE:PS01361
PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_193837.1scanprosite:PS01361
STRING:3702.AT4G21050.1TAIR:AT4G21050UniGene:At.54450UniProt:Q9SUA9
Coordinates (TAIR10) chr4:+:11238441..11239073
Molecular Weight (calculated) 23970.80 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.75
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNLNVFANE DNQVNGLKRP PPSRVCPRCD SDNTKFCFYN NYSESQPRYF CKNCRRYWTH GGALRNIPVG GSCRKPKRLK VDQSSISEMV SVENQPINHQ
101: SFRQTQENNE FVRSFDASSS ATVTAVPNHF GYLSELHGVT NLLPIQSFRT MDCLDFGDES FQQGYYDVGS NDLIDNPLIN QSIGGYVDNL TSYCINQVEP
201: KLQPRYEHES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)