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AT4G20890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubulin beta-9 chain
Curator
Summary (TAIR10)
tubulin 9
Computational
Description (TAIR10)
tubulin beta-9 chain (TUB9); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: tubulin complex, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 4 (TAIR:AT5G44340.1); Has 23670 Blast hits to 23574 proteins in 4893 species: Archae - 39; Bacteria - 42; Metazoa - 4465; Fungi - 14215; Plants - 1550; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).
Protein Annotations
BioGrid:13128eggNOG:COG5023eggNOG:KOG1375EMBL:AL080282EMBL:AL161553EMBL:AY087594EMBL:AY128337
EMBL:CP002687EMBL:M84706EnsemblPlants:AT4G20890EnsemblPlants:AT4G20890.1entrez:827837Gene3D:1.10.287.600Gene3D:3.30.1330.20
Gene3D:3.40.50.1440GeneID:827837Genevisible:P29517GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005774
GO:GO:0005794GO:GO:0005874GO:GO:0005886GO:GO:0007017GO:GO:0009506GO:GO:0009507GO:GO:0045298
GO:GO:0046686Gramene:AT4G20890.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF97HOGENOM:HOG000165710InParanoid:P29517IntAct:P29517
InterPro:IPR000217InterPro:IPR002453InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838InterPro:IPR017975InterPro:IPR018316
InterPro:IPR023123KEGG:ath:AT4G20890KO:K07375MINT:MINT-7968875ncoils:CoilOMA:EEHAIDGPANTHER:PTHR11588
PaxDb:P29517Pfam:P29517Pfam:PF00091Pfam:PF03953PhylomeDB:P29517PIR:JQ1593PRIDE:P29517
PRINTS:PR01161PRINTS:PR01163PRO:PR:P29517PROSITE:PS00227PROSITE:PS00228ProteinModelPortal:P29517Proteomes:UP000006548
RefSeq:NP_193821.1scanprosite:PS00227scanprosite:PS00228SMART:SM00864SMART:SM00865SMR:P29517STRING:3702.AT4G20890.1
SUPFAM:SSF52490SUPFAM:SSF55307TAIR:AT4G20890tair10-symbols:TUB9UniGene:At.28063UniProt:P29517
Coordinates (TAIR10) chr4:+:11182218..11183840
Molecular Weight (calculated) 49660.70 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.33
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)