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AT4G20830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : mitochondrion 15276431
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
AmiGO : vacuole 15215502
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : mitochondrion 15276431
TAIR : plasma membrane 16618929
TAIR : vacuole 15215502
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25641898 (2015): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15276431 (2004): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14595688 (2003): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1); Has 4327 Blast hits to 4201 proteins in 643 species: Archae - 38; Bacteria - 1800; Metazoa - 2; Fungi - 1615; Plants - 732; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20830-MONOMERBioCyc:ARA:GQT-1739-MONOMERBioGrid:13122EC:1.21.-.-eggNOG:COG0277eggNOG:ENOG410IKGWEMBL:AF083756
EMBL:AF424621EMBL:AL080254EMBL:AL161553EMBL:AY062595EMBL:AY133533EMBL:CP002687EnsemblPlants:AT4G20830
EnsemblPlants:AT4G20830.1entrez:827831ExpressionAtlas:Q9SVG4Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:827831Genevisible:Q9SVG4
GO:GO:0005739GO:GO:0005773GO:GO:0005829GO:GO:0005886GO:GO:0006979GO:GO:0009505GO:GO:0009506
GO:GO:0016614GO:GO:0031225GO:GO:0048046GO:GO:0050660hmmpanther:PTHR32448hmmpanther:PTHR32448:SF34HOGENOM:HOG000238933
InParanoid:Q9SVG4InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169KEGG:ath:AT4G20830
MINT:MINT-8070196OMA:KVLYSFMPaxDb:Q9SVG4Pfam:PF01565Pfam:PF08031Pfam:Q9SVG4Pfscan:PS51387
PhylomeDB:Q9SVG4PIR:T10625PRIDE:Q9SVG4PRO:PR:Q9SVG4PROSITE:PS51387ProteinModelPortal:Q9SVG4Proteomes:UP000006548
RefSeq:NP_193815.2RefSeq:NP_974580.1SMR:Q9SVG4STRING:3702.AT4G20830.1SUPFAM:SSF56176SwissPalm:Q9SVG4TAIR:AT4G20830
TMHMM:TMhelixUniGene:At.3570UniProt:B9DFM8UniProt:Q9SVG4
Coordinates (TAIR10) chr4:+:11155486..11157577
Molecular Weight (calculated) 63562.50 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.15
Length 570 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTTPPRTFV SVPFFFFFLL FLSLPLSSFS QSNSVYNSFL KCFSDKTKSP QSQITDNVFS QTNPAFSSVL RAYIRNARFN TSSTLKPTII ITPRSESHVS
101: AAVTCSKTLN FLLKIRSGGH DYDGLSYISD KPFFILDMSN IRDVSVDIAS NSAWISAGAT LGEVYYRIWE KSRVHGFPAG VCPTVGVGGH LSGGGYGNMV
201: RKFGLSVDYV EDAKIVDVNG RVLDRKAMGE DLFWAITGGG GGSYGVVLGY KVKLVPVPSV VTVFRVEQYM DSGAVDMVHK WQSVGPKTDP NLFMRMLIQP
301: VTRKKVKTVR ASVVALFLGR ADEVVALLSK EFPELGLKKE NCSEMTWFQS ALWWDNRLNA TQVDPKVFLD RNLDTSSFGK RKSDYVATAI PKKGIESLFK
401: KMIELGKIGL VFNPYGGKMA EVAVNAKPFP HRNKLFKIQY SVNWKENSAE IEKGYLNQAK VLYSFMTGFV SKNPRSSYFN YRDVDIGVND HGANSYKEGE
501: VYGRKYFGEN FDRLVKIKTA VDPGNFFRNE QSIPTLKNEK GMLLPEPGKA RRWSRVGGAT VVATVVLHVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)