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AT4G20480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.390
nucleus 0.372
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative endonuclease or glycosyl hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AY150390EMBL:CP002687EnsemblPlants:AT4G20480EnsemblPlants:AT4G20480.1
entrez:827796GeneID:827796GO:GO:0004519GO:GO:0005777
GO:GO:0010468Gramene:AT4G20480.1hmmpanther:PTHR14379HOGENOM:HOG000148347
InterPro:IPR021139InterPro:IPR024768KEGG:ath:AT4G20480PANTHER:PTHR14379
Pfam:PF01936PhylomeDB:Q8H1G2Proteomes:UP000006548RefSeq:NP_567602.1
STRING:3702.AT4G20480.1TAIR:AT4G20480UniGene:At.3555UniProt:Q8H1G2
Coordinates (TAIR10) chr4:-:11034465..11035526
Molecular Weight (calculated) 29215.00 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.10
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRVMEPPPI EEAALAPVSV FWDIKSFPVP DGYDARLVGP CIKRNLRKLG YTGPITITAV GVLSEVPRDI LKAVYSTGIS LKEVIKSPTN MYALFLESSL
101: LRTPPPANMM VISRPPSYIP RHFSSIRDKD REKGRYTIFP FPFGEMPLTL AISLWEDFLL ADPVALEEEK CSEMGDPASW FCAVCHHFAA PDLVTGRDLI
201: VSSRISILDN MHNCFNSKLS PVALALYAST QLWLPALGLY ALTKKLRRRP ELRLPVIQLV N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)