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AT4G20450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 157406 Blast hits to 121766 proteins in 4522 species: Archae - 95; Bacteria - 13354; Metazoa - 44140; Fungi - 9932; Plants - 71049; Viruses - 392; Other Eukaryotes - 18444 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20450-MONOMERBioGrid:13084EC:2.7.11.1eggNOG:COG0515eggNOG:ENOG410J9ZBEMBL:AL080253EMBL:AL161553
EMBL:CP002687EMBL:FJ708748EnsemblPlants:AT4G20450EnsemblPlants:AT4G20450.1entrez:827793Gene3D:2.60.120.200Gene3D:3.80.10.10
GeneID:827793Genevisible:C0LGQ7GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT4G20450.1hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF44HOGENOM:HOG000116550InParanoid:C0LGQ7InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441InterPro:IPR024788InterPro:IPR032675iPTMnet:C0LGQ7KEGG:ath:AT4G20450
OMA:PSCESETPaxDb:C0LGQ7Pfam:C0LGQ7Pfam:PF07714Pfam:PF12819Pfam:PF13855Pfscan:PS50011
PhylomeDB:C0LGQ7PIR:T10587PRIDE:C0LGQ7PRO:PR:C0LGQ7PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:C0LGQ7Proteomes:UP000006548RefSeq:NP_193778.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:C0LGQ7
STRING:3702.AT4G20450.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT4G20450TMHMM:TMhelixUniGene:At.54432UniProt:C0LGQ7
Coordinates (TAIR10) chr4:-:11024054..11029008
Molecular Weight (calculated) 100697.00 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.30
Length 898 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGIHKLIFL ALIWIFLITN IVDAQDQQGF ISLDCGMPRN ESSYTDESTG LNFSSDADFI SSGKSGTIKT EDSDSGVKYI KPYKQLRYFP EGARNCYNLT
101: VMQGTHYLIR AVFVYGNYDL KQRPKFDLYL GPNFWTTINL QDPSGGFYYR IWLQDGTVEE VIHMPKSNNL DICLVKTGTT TPFISSLELR PLRDDTYTTT
201: TGSLKLISRW YFRKPFPTLE SIIRHPDDVH DRLWDVYHAD EEWTDINTTT PVNTTVNAFD LPQAIISKAS IPQVASDTWS TTWSIQNPDD DVHVYLHFAE
301: IQALKPSDTR EFSILWNKNT IIRDYYSPLE FMADTVPIRT SSKCGDDGFC SLDLTRTKSS TLPPYCNAME VFGLLQLLQT ETDENDVTTL KNIQATYRIQ
401: KTNWQGDPCV PIQFIWTGLN CSNMFPSIPP RITSIDFSNF GLNGTITSDI QYLNQLQKLD LSNNNLTGKV PEFLAKMKLL TFINLSGNNL SGSIPQSLLN
501: MEKNGLITLL YNGNNLCLDP SCESETGPGN NKKKLLVPIL ASAASVGIII AVLLLVNILL LRKKKPSKAS RSSMVANKRS YTYEEVAVIT NNFERPLGEG
601: GFGVVYHGNV NDNEQVAVKV LSESSAQGYK QFKAEVDLLL RVHHINLVTL VGYCDEGQHL VLIYEYMSNG NLKQHLSGEN SRSPLSWENR LRIAAETAQG
701: LEYLHIGCKP PMIHRDIKSM NILLDNNFQA KLGDFGLSRS FPVGSETHVS TNVAGSPGYL DPEYYRTNWL TEKSDVFSFG VVLLEIITSQ PVIDQTREKS
801: HIGEWVGFKL TNGDIKNIVD PSMNGDYDSS SLWKALELAM SCVSPSSSGR PNMSQVANEL QECLLTENSR KGGRHDVDSK SSLEQSTSFG PEHIPDAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)