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AT4G20380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LSD1 zinc finger family protein
Curator
Summary (TAIR10)
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge
Computational
Description (TAIR10)
LESION SIMULATING DISEASE (LSD1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: lsd one like 1 (TAIR:AT1G32540.1); Has 361 Blast hits to 293 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G20380EnsemblPlants:AT4G20380.1entrez:827786hmmpanther:PTHR31747hmmpanther:PTHR31747:SF3Pfam:PF06943tair10-symbols:LSD1
TIGRfam:TIGR01053
Coordinates (TAIR10) chr4:+:11005027..11006438
Molecular Weight (calculated) 19563.70 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.14
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)