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AT4G20330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription initiation factor TFIIE, beta subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription initiation factor TFIIE, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit, DNA-binding domain (InterPro:IPR003166); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIIE, beta subunit (TAIR:AT4G21010.1); Has 316 Blast hits to 316 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 101; Plants - 70; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5174eggNOG:KOG3095EMBL:AF385715EMBL:AL080253EMBL:AL161552EMBL:AY078018EMBL:AY099713
EMBL:AY463608EMBL:CP002687EnsemblPlants:AT4G20330EnsemblPlants:AT4G20330.1entrez:827781GeneID:827781GO:GO:0003677
GO:GO:0003743GO:GO:0005673GO:GO:0006355GO:GO:0006367Gramene:AT4G20330.1hmmpanther:PTHR12716hmmpanther:PTHR12716:SF8
HOGENOM:HOG000243420InterPro:IPR003166InterPro:IPR016656KEGG:ath:AT4G20330KO:K03137OMA:YKATHDVPfam:PF02186
Pfscan:PS51351PhylomeDB:Q9SUP3PIR:G85230PIRSF:PIRSF016398PROSITE:PS51351Proteomes:UP000006548RefSeq:NP_193766.1
STRING:3702.AT4G20330.1TAIR:AT4G20330UniGene:At.3546UniGene:At.65820UniProt:Q9SUP3
Coordinates (TAIR10) chr4:-:10982683..10984039
Molecular Weight (calculated) 32431.70 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.74
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKEQLDKF NKQQVKCQST LSSIASSRER TSSSRQNVPL PAAITQKKPD AAPVKFSSDT ERLQNINNIR KAPVGAQIKR VIDLLYERRL ALTPEQINEW
101: CHVDMHANKA VFDSLRKNPK AHYDGRRFSY KATHDVNDKN QLLSLVRKYL DGIAVVDLKD AYPNVMEDLK ALSASGDIYL LSNSQEDIAY PNDFKCEIKV
201: DDEFKALFRD INIPNDMLDV EKELLKIGLK PATNTAERRA AAQTHGISNK PKDKKKKKQE ISKRTKLTNA HLPELFQNLN GSSSRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)