AT4G20310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.729 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptidase M50 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50, mammalian sterol-regulatory element binding protein (InterPro:IPR001193), Peptidase M50 (InterPro:IPR008915); Has 349 Blast hits to 349 proteins in 137 species: Archae - 138; Bacteria - 13; Metazoa - 102; Fungi - 6; Plants - 62; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10961639..10963283 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43363.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.33 | ||||||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEISGRRMRR FRMRFRRDHL TGGENIENEA SCCYCDLKIS NFNEPIFRLG RRFSGVLKVW FSIGLGFGVA SLILVTVFLL LQFHSNPLFS NRLTSAVFGF 101: SPSTRVSLSG IAYVLVSTVI TVSVHELGHA LAAASEGIQM EYIAVFIAAI FPGGLVAFDN DVLQSLPSFN ALRIYCAGIW HNAVFCALCV FALFLLPVML 201: SPFYKHGESL TVVDVPSVSP LFGYLSPGDV IVSLDGIQVH KPSEWLELAA ILDKENSKTS NGSLYLGGSR RFHHGKGYCV PISLIEEGYK GKMVENQFVC 301: PGDLTAFRTM PCSNAAIREV SVCLDAKDIV KLQKCGDGWV TTSDTDNQSD CVCPQAYCGQ RSLIKEPRHR IALDLVWISI PQIVLARLFL SVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)