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AT4G20300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 587 Blast hits to 572 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 183; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J01NeggNOG:ENOG4111VHHEMBL:CP002687EnsemblPlants:AT4G20300EnsemblPlants:AT4G20300.1entrez:827777ExpressionAtlas:F4JUU4
GeneID:827777Gramene:AT4G20300.1hmmpanther:PTHR33130hmmpanther:PTHR33130:SF12InterPro:IPR012438PaxDb:F4JUU4Pfam:PF07797
PRIDE:F4JUU4ProteinModelPortal:F4JUU4Proteomes:UP000006548RefSeq:NP_849413.1STRING:3702.AT4G20300.2TAIR:AT4G20300UniGene:At.46983
UniProt:F4JUU4
Coordinates (TAIR10) chr4:+:10955813..10958287
Molecular Weight (calculated) 38135.70 Da
IEP (calculated) 11.46
GRAVY (calculated) -1.18
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRYQRVSPD CLPLTNGGKK PYLRPSPSRA TNEDTTTTTV ITTTSIAGRG FNGGSCTTTT NNTSSLDGVP KGFRFRSTQQ QQQQQDPSPS RRGGDVLLQW
101: GQRKRSRASR AEIRSTTTIT TTADDSSSSS GQGKIQSNKP QRRSMNPSMP PPPPAPPIFS GRSTNPRNGF VIGKESFFPS RNLEDRSANG SPSRNNINGR
201: MISRSGGSKR SPPSPDQIEK RSSVRDQRQN GFDHQQQQHQ RVNRSESTAQ GHQEVEINGE REKATQEWPR IYIALSRKEK EEDFLVMKGT KLPHRPRKRA
301: KNIDKALQFC FPGMWLSDLT KNRYEVREKK NVKKVINFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)