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AT4G20270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.
Computational
Description (TAIR10)
BARELY ANY MERISTEM 3 (BAM3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, leaf development, floral organ development; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 219938 Blast hits to 139586 proteins in 4977 species: Archae - 151; Bacteria - 21929; Metazoa - 70277; Fungi - 10656; Plants - 90391; Viruses - 423; Other Eukaryotes - 26111 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20270-MONOMERBioGrid:13066EC:2.7.11.1eggNOG:COG4886eggNOG:ENOG410IFVDEMBL:AK229453EMBL:AL022224
EMBL:AL161552EMBL:CP002687EMBL:FJ708747EnsemblPlants:AT4G20270EnsemblPlants:AT4G20270.1entrez:827774Gene3D:3.80.10.10
GeneID:827774Genevisible:O65440GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0010075GO:GO:0016021
GO:GO:0030154GO:GO:0048437hmmpanther:PTHR27000hmmpanther:PTHR27000:SF121InParanoid:O65440InterPro:IPR000719InterPro:IPR001611
InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210InterPro:IPR032675iPTMnet:O65440KEGG:ath:AT4G20270
OMA:LAMCWSAPaxDb:O65440Pfam:O65440Pfam:PF00069Pfam:PF08263Pfam:PF13855Pfscan:PS50011
Pfscan:PS51450PhylomeDB:O65440PIR:T05335PRIDE:O65440PRO:PR:O65440PROSITE:PS00108PROSITE:PS50011
PROSITE:PS51450ProteinModelPortal:O65440Proteomes:UP000006548RefSeq:NP_193760.1scanprosite:PS00108SMART:SM00220SMART:SM00369
SMR:O65440STRING:3702.AT4G20270.1SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT4G20270tair10-symbols:BAM3
TMHMM:TMhelixUniGene:At.32731UniProt:O65440
Coordinates (TAIR10) chr4:+:10949822..10952924
Molecular Weight (calculated) 110290.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.04
Length 992 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKIFTFFL ILSSISPLLC SSLISPLNLS LIRQANVLIS LKQSFDSYDP SLDSWNIPNF NSLCSWTGVS CDNLNQSITR LDLSNLNISG TISPEISRLS
101: PSLVFLDISS NSFSGELPKE IYELSGLEVL NISSNVFEGE LETRGFSQMT QLVTLDAYDN SFNGSLPLSL TTLTRLEHLD LGGNYFDGEI PRSYGSFLSL
201: KFLSLSGNDL RGRIPNELAN ITTLVQLYLG YYNDYRGGIP ADFGRLINLV HLDLANCSLK GSIPAELGNL KNLEVLFLQT NELTGSVPRE LGNMTSLKTL
301: DLSNNFLEGE IPLELSGLQK LQLFNLFFNR LHGEIPEFVS ELPDLQILKL WHNNFTGKIP SKLGSNGNLI EIDLSTNKLT GLIPESLCFG RRLKILILFN
401: NFLFGPLPED LGQCEPLWRF RLGQNFLTSK LPKGLIYLPN LSLLELQNNF LTGEIPEEEA GNAQFSSLTQ INLSNNRLSG PIPGSIRNLR SLQILLLGAN
501: RLSGQIPGEI GSLKSLLKID MSRNNFSGKF PPEFGDCMSL TYLDLSHNQI SGQIPVQISQ IRILNYLNVS WNSFNQSLPN ELGYMKSLTS ADFSHNNFSG
601: SVPTSGQFSY FNNTSFLGNP FLCGFSSNPC NGSQNQSQSQ LLNQNNARSR GEISAKFKLF FGLGLLGFFL VFVVLAVVKN RRMRKNNPNL WKLIGFQKLG
701: FRSEHILECV KENHVIGKGG RGIVYKGVMP NGEEVAVKKL LTITKGSSHD NGLAAEIQTL GRIRHRNIVR LLAFCSNKDV NLLVYEYMPN GSLGEVLHGK
801: AGVFLKWETR LQIALEAAKG LCYLHHDCSP LIIHRDVKSN NILLGPEFEA HVADFGLAKF MMQDNGASEC MSSIAGSYGY IAPEYAYTLR IDEKSDVYSF
901: GVVLLELITG RKPVDNFGEE GIDIVQWSKI QTNCNRQGVV KIIDQRLSNI PLAEAMELFF VAMLCVQEHS VERPTMREVV QMISQAKQPN TF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)