AT4G20210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1635 Blast hits to 1609 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1631; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10913613..10918282 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69098.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 600 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAIKTFSPK FGFQISLSPR THLTPVRFPP TACPVKPANL VRLKATRALI RDPQESNRKF QKFPPSEWTN RFDSVSVDAS EMDALRKEID KIIPNVKKEL 101: MSSQGIESTK KKILMVYLLV SLGLAYHFED EIEECLKEGF ETIEEMMAGE DNLYTISIIF LVLRTYGHHM SSDIFQKFKG NDGNFKGCIS GDAKGLLALY 201: EAAQLRTTTE YIMEEALSFT SSNLELLAAD GRCPPHLSKH IRNALGLSQH KQMEVLVAVE YISFYEQEKD HDKILLKFAK LNFKLMQLHY LEELKVVTKW 301: YKEHDFASNL PPYFKYVIVE NHFFAITMYF EPKFSQKRIM LAKYFTVLVL LDDTCDRYAS LSEAESLTNS LERWAPDDAM DKQPHYLKFV FKFIMGCFEE 401: FERELASEGR SYSVKATLEE FKTIVKANFD FAKLAHTGHV PSFKEYMEVG EVEVGVCATL AGNLMCIGHI GDEGVYEWLK SRPKFLKAAS TYGRLMNDIA 501: GFEDDMKREY VITGVNTYMK QYGLTKMEAI RELQNLVEYN HTIMNEEFLK TTDLPRQIRK QVINVARSLN VSYTEGEGFT HTKGKVDEYI TSLFITPIRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)