AT4G20170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.496 plasma membrane 0.464 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF23) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 199 Blast hits to 199 proteins in 36 species: Archae - 0; Bacteria - 27; Metazoa - 44; Fungi - 2; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10896810..10898794 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57785.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMVKEKEQN TKDKKLLVGV IWNFSAELKL TFMALLVLCT LATLLPFIPS SFSLSTSDFR FCISRFSSAV PLNTTTTVEE SSSSPSPEKN LDRVLDNGVI 101: KRTFTGYGSA AYNFVSMSAY RGGVNSFAVI GLSSKPLHVY GHPSYRCEWV SLDPTQDPIS TTGFKILTDW GYGRIYTTVV VNCTFSSISA VNPQNSGGTL 201: ILHATTGDPT LNLTDSISVL TEPPKSVDFD LYNSTKKTKK YDYLYCGSSL YGNLSPQRVR EWIAYHVRFF GERSHFVLHD AGGIHEEVFE VLKPWIELGR 301: VTLHDIRDQE RFDGYYHNQF MIVNDCLHRY RFMTKWMFFF DVDEFLHVPV KETISSVMES LEEYSQFTIE QMPMSSRICY SGDGPARTYR KWGIEKLAYR 401: DVKKVPRRDR KYAVQPENVF ATGVHMSQNL QGKTYHKAES KIRYFHYHGS ISQRREPCRQ LFNDSRVVFE NTPYVLDTTI CDVGLAVRTF ELRTIGDRLL 501: RTRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)