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AT4G20160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXPVeggNOG:ENOG410Z5M9EMBL:AL022224EMBL:AL161552EMBL:CP002687EnsemblPlants:AT4G20160EnsemblPlants:AT4G20160.1
entrez:827762GeneID:827762GO:GO:0009507Gramene:AT4G20160.1hmmpanther:PTHR10044hmmpanther:PTHR10044:SF103KEGG:ath:AT4G20160
ncoils:CoilOMA:LRIRCYEPIR:T05324Proteomes:UP000006548RefSeq:NP_193749.1TAIR:AT4G20160UniGene:At.54426
UniProt:O65430
Coordinates (TAIR10) chr4:+:10890983..10894971
Molecular Weight (calculated) 134517.00 Da
IEP (calculated) 4.94
GRAVY (calculated) -1.14
Length 1188 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRYFCLIYR NFKSETLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)