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AT4G20020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWM6eggNOG:ENOG410ZPPQEMBL:AL021637EMBL:AL161552
EMBL:BT002761EMBL:BX826898EMBL:CP002687EnsemblPlants:AT4G20020
EnsemblPlants:AT4G20020.1EnsemblPlants:AT4G20020.2entrez:827747ExpressionAtlas:O49429
GeneID:827747Genevisible:O49429GO:GO:0005739GO:GO:0009507
GO:GO:1900864GO:GO:1900865hmmpanther:PTHR31346hmmpanther:PTHR31346:SF5
HOGENOM:HOG000243016KEGG:ath:AT4G20020OMA:NYQNGPPPaxDb:O49429
Pfam:O49429PhylomeDB:O49429PIR:T04886PRIDE:O49429
PRO:PR:O49429ProteinModelPortal:O49429Proteomes:UP000006548RefSeq:NP_193735.1
RefSeq:NP_974579.1STRING:3702.AT4G20020.1SwissPalm:O49429TAIR:AT4G20020
UniGene:At.32756UniProt:O49429
Coordinates (TAIR10) chr4:-:10844433..10846085
Molecular Weight (calculated) 45160.00 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.89
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMISHRLRR ALLTATSYVN RSISSSITPA SDFPSVSAAV LKRSVIGRST EVATRAPARL FSTRQYKLYK EGDEITEDTV LFEGCDYNHW LITMDFSKEE
101: TPKSPEEMVA AYEETCAQGL GISVEEAKQR MYACSTTTYQ GFQAIMTEQE SEKFKDLPGV VFILPDSYID PQNKEYGGDK YENGVITHRP PPIQSGRARP
201: RPRFDRSGGG SGGPQNFQRN TQYGQQPPMQ GGGGSYGPQQ GYATPGQGQG TQAPPPFQGG YNQGPRSPPP PYQAGYNQGQ GSPVPPYQAG YNQVQGSPVP
301: PYQGTQSSYG QGGSGNYSQG PQGGYNQGGP RNYNPQGAGN FGPASGAGNL GPAPGAGNPG YGQGYSGPGQ EQNQTFPQAD QRNRDWNNNN PAGQPGSDQV
401: RSRSIMNLAS FFFDILIRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)