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AT4G19880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutathione S-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glutathione S-transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT5G45020.2); Has 2453 Blast hits to 2453 proteins in 809 species: Archae - 30; Bacteria - 1521; Metazoa - 25; Fungi - 239; Plants - 128; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-666-MONOMERDNASU:827734EMBL:BT000887EMBL:CP002687EnsemblPlants:AT4G19880EnsemblPlants:AT4G19880.1entrez:827734
ExpressionAtlas:Q8H121Gene3D:1.20.1050.10Gene3D:3.40.30.10GeneID:827734GO:GO:0016740Gramene:AT4G19880.1hmmpanther:PTHR32419
hmmpanther:PTHR32419:SF6HOGENOM:HOG000245143InterPro:IPR004045InterPro:IPR010987InterPro:IPR012336InterPro:IPR016639KEGG:00480+2.5.1.18
KEGG:00980+2.5.1.18KEGG:00982+2.5.1.18PANTHER:PTHR32419Pfam:PF13409Pfam:PF13410Pfscan:PS50405PhylomeDB:Q8H121
PIRSF:PIRSF015753PROSITE:PS50405Proteomes:UP000006548RefSeq:NP_193723.3SMR:Q8H121SUPFAM:SSF47616SUPFAM:SSF52833
SwissPalm:Q8H121TAIR:AT4G19880UniGene:At.24922UniProt:Q8H121
Coordinates (TAIR10) chr4:-:10784691..10786376
Molecular Weight (calculated) 40577.70 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.50
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYSTIISNT SFLSLASKFT TRGSRLQCTV SMARSAVDET SDSGAFQRTA STFRNFVSKD SNSQFPAESG RYHLYISYAC PWASRCLSYL KIKGLDDAIS
101: FSSVKPIWGR TKETDEHMGW VFPGSDTEVP GADPDHLNGA KSVRELYEIA SPNYTGKYTV PVLWDKKLKT VVNNESAEII RMFNTEFNHI AGNPDLDLYP
201: SHLQAKIDET NEWIYNGINN GVYRCGFAKK QGPYEEAVEQ VYEALDRCEE ILGKHRYICG NTLTETDIRL FVTLIRFDEV YAVHFKCNKK LIREYPNLFN
301: YTKDIFQIPG MSSTVNMNHI KQHYYGSHPS INPFGIIPHG PNIDYTSPHD RHRFSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)