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AT4G19840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25714357 (2015): cytosol None
  • PMID:25714357 (2015): nucleus nuclear matrix
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phloem protein 2-A1
Curator
Summary (TAIR10)
encodes a phloem lectin, similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells.
Computational
Description (TAIR10)
phloem protein 2-A1 (PP2-A1); BEST Arabidopsis thaliana protein match is: phloem protein 2-A4 (TAIR:AT1G33920.1); Has 488 Blast hits to 483 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 488; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13021DNASU:827728eggNOG:ENOG410IG42eggNOG:ENOG410YIYFEMBL:AL024486EMBL:AL161551EMBL:AY085730
EMBL:AY090355EMBL:AY122906EMBL:CP002687EnsemblPlants:AT4G19840EnsemblPlants:AT4G19840.1entrez:827728GeneID:827728
Genevisible:O81865GO:GO:0009625GO:GO:0030246GO:GO:0043394Gramene:AT4G19840.1hmmpanther:PTHR32278hmmpanther:PTHR32278:SF3
HOGENOM:HOG000237521IntAct:O81865InterPro:IPR025886KEGG:ath:AT4G19840OMA:ISLFEYDPaxDb:O81865Pfam:O81865
Pfam:PF14299PhylomeDB:O81865PIR:T04765PRIDE:O81865PRO:PR:O81865ProteinModelPortal:O81865Proteomes:UP000006548
RefSeq:NP_193719.1STRING:3702.AT4G19840.1TAIR:AT4G19840tair10-symbols:ATPP2-A1tair10-symbols:ATPP2A-1tair10-symbols:PP2-A1UniGene:At.24681
UniProt:O81865
Coordinates (TAIR10) chr4:+:10774336..10775701
Molecular Weight (calculated) 28102.90 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.47
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKKHCSELL PNKMFRNQDS KYLIPVQKEA PPVTTLPMKA STVKSPHNCE AILRDADPPI SLSSVNLSEQ LRSGVFLKPK KQIKYWVDER NSNCFMLFAK
101: NLSITWSDDV NYWTWFTEKE SPNENVEAVG LKNVCWLDIT GKFDTRNLTP GIVYEVVFKV KLEDPAYGWD TPVNLKLVLP NGKEKPQEKK VSLRELPRYK
201: WVDVRVGEFV PEKSAAGEIT FSMYEHAAGV WKKGLSLKGV AIRPKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)