suba logo
AT4G19820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein with chitinase insertion domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19810.1); Has 5577 Blast hits to 5400 proteins in 1033 species: Archae - 25; Bacteria - 2026; Metazoa - 1733; Fungi - 1226; Plants - 161; Viruses - 107; Other Eukaryotes - 299 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G19820-MONOMERCAZy:GH18eggNOG:COG3325eggNOG:KOG2806EMBL:AL024486EMBL:AL161551EMBL:CP002687
EnsemblPlants:AT4G19820EnsemblPlants:AT4G19820.1entrez:827726Gene3D:3.10.50.10Gene3D:3.20.20.80GeneID:827726GO:GO:0004568
GO:GO:0005975GO:GO:0006032Gramene:AT4G19820.1hmmpanther:PTHR11177hmmpanther:PTHR11177:SF219HOGENOM:HOG000240738InterPro:IPR001223
InterPro:IPR011583InterPro:IPR013781InterPro:IPR017853InterPro:IPR029070KEGG:ath:AT4G19820KO:K01183OMA:SWHIGAD
Pfam:PF00704PhylomeDB:O81863PIR:T04763Proteomes:UP000006548RefSeq:NP_193717.1SMART:SM00636SMR:O81863
STRING:3702.AT4G19820.1SUPFAM:SSF51445SUPFAM:SSF54556TAIR:AT4G19820UniGene:At.70318UniProt:O81863
Coordinates (TAIR10) chr4:-:10767436..10768614
Molecular Weight (calculated) 40875.50 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.10
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTKLISIT FFLSLLLRFS SAQTVVKATY WFAESESPLA QIDSSLFTHL FCAFADINTL TYQVIVSSRN KPKFSTFTQT VRRRNPTVKT LLSIGGDFTY
101: NFAFASMASN PTSRKLFISS SIKLARSCGF HGLDLNWKYP SITTEMDNFG KLLREWRLAV EAEARSSGKP RLLLTAAVFY SYSYYSVLHP VNAVADSLDW
201: VNLVAYDFYE SGSSRVTCSP APLYDPITTG PSGDAGVRAW TQAGLPAKKA VLGFPLYGYA WCLTDAKNHN YYANSSGPAI SPDGSIGYDQ IRRFIVDNKA
301: TMVYNSNLVQ NYCYAKKTWI GYDDNQSIVM KVKYAKQRGL LGYFSWHIGA DDNSRLSRAG SVLFQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)