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AT4G19650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT5G45113.1); Has 236 Blast hits to 231 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:CP002687EnsemblPlants:AT4G19650
EnsemblPlants:AT4G19650.1entrez:827709GeneID:827709GO:GO:0003690
GO:GO:0005739GO:GO:0006355Gramene:AT4G19650.1hmmpanther:PTHR13068
hmmpanther:PTHR13068:SF7InParanoid:F4JTX3InterPro:IPR003690iPTMnet:F4JTX3
KEGG:ath:AT4G19650OMA:AYLCYDMPaxDb:F4JTX3Pfam:PF02536
PRIDE:F4JTX3ProteinModelPortal:F4JTX3Proteomes:UP000006548RefSeq:NP_193700.2
SMART:SM00733SMR:F4JTX3STRING:3702.AT4G19650.1TAIR:AT4G19650
UniGene:At.54414UniProt:F4JTX3
Coordinates (TAIR10) chr4:+:10691674..10695166
Molecular Weight (calculated) 66749.10 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.22
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKEKDVTET IMREEKKGSF FRDFEKLSKV AMLLSRNQRR VHKLLNMISN LNYCITFSSI PRQNPVQRLK AVFVRINLSY NNTRLTYQLE HISKNSPCFM
101: STLLSKIDDN QKDVSKGLTK FLRYNPINEF EPFFESLGLC PYEFETFLPR KLMFLSDDGI MFENFHALCN YGIPRGKIGR MYKEAREIFR YESGMLAMKL
201: RGYENLGLSK ATVIKLVTSC PLLLVGGIDA EFSSVVDKLK GLQVGCDWLG RYLSDRKTYS WRRILETIEF LDKVGCKEEK LSSLLKTYPA LVIEGSGKKF
301: YVLFGRLFKA GLQVNEIYRL FIDNPEMLSD KCVKNIQKTL DFLIAIRMET QFITKILLSH MELIGSCSLP APRTACLSLN VKQDELCKIL KKEPLRLFCF
401: VSTTKKRKSK PLSEDSRKYL EKTEFLLRLG YVENSDEMVK ALKQFRGRGD QLQERFDCLV KAGLNYNVVT EIIRHAPMIL NLSKDVIEKK IHSLTELLGY
501: PIESLVRFPA YLCYDMQRIH HRFSMYLWLR ERDAAKPMLS PSTILTCGDA RFVKYFVNVH PEGPAIWESI NQSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)