suba logo
AT4G19620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL021768EMBL:AL161551EMBL:CP002687EnsemblPlants:AT4G19620
EnsemblPlants:AT4G19620.1entrez:827704GeneID:827704Gramene:AT4G19620.1
KEGG:ath:AT4G19620PIR:T06155Proteomes:UP000006548RefSeq:NP_193697.1
TAIR:AT4G19620UniGene:At.54413UniProt:O49479
Coordinates (TAIR10) chr4:-:10682433..10682844
Molecular Weight (calculated) 12587.90 Da
IEP (calculated) 4.25
GRAVY (calculated) -0.40
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSDDSDFP DISAESVTSP PPLPDVETLK DTLTEETEAF AKKLIRDVKP FIKRTTTTRD EVRAMIRCLS KCILALNSSL MEEGLAVDDT VVQPKADDSE
101: QSIETMRKNF LSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)