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AT4G19580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.839
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), WCCH motif (InterPro:IPR005159); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G19570.1); Has 13700 Blast hits to 13690 proteins in 2768 species: Archae - 100; Bacteria - 6424; Metazoa - 2442; Fungi - 948; Plants - 1119; Viruses - 8; Other Eukaryotes - 2659 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G19580EnsemblPlants:AT4G19580.1entrez:827700
Gene3D:1.10.287.110GeneID:827700Gramene:AT4G19580.1hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF262InParanoid:F4JT89InterPro:IPR001623InterPro:IPR005159
iPTMnet:F4JT89KEGG:ath:AT4G19580OMA:MMIDVYIPaxDb:F4JT89
Pfam:PF00226Pfam:PF03716Pfscan:PS50076PRINTS:PR00625
PROSITE:PS50076ProteinModelPortal:F4JT89Proteomes:UP000006548RefSeq:NP_193693.5
SMART:SM00271SMR:F4JT89SUPFAM:SSF46565TAIR:AT4G19580
UniGene:At.54411UniProt:F4JT89
Coordinates (TAIR10) chr4:+:10668367..10669452
Molecular Weight (calculated) 35604.60 Da
IEP (calculated) 9.41
GRAVY (calculated) -1.13
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCNKEEAKK AMDIAEKKLS KNDYDGAKTF ISKAQALYPK LDGLEQVVMM IDVYISASNK INGEADWYGI LGIDPLADEE AVKKQYKKLA LLLHPDKNRF
101: NGAEGAFKLV RHARDLLSDQ PCLIYNVQGQ TQTQKSQNHT RTRTCVAYDH KRKPKQVKRK RSRTQDPPKP HKYKYKYEFR KRNRMHKPHE YAYECNSDSS
201: ESDPEPDSSW KQKKPRKQEE DITFWTVCKN NKCNTHCKLG KAEVIPEMKY GRPVYSFNAK FQPTSKSTSD ASSSSTTSTS DTANEAQDRE SSQEEFVPAN
301: ASPAARGDAN EA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)