AT4G19570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chaperone DnaJ-domain superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G19580.1); Has 23291 Blast hits to 22288 proteins in 3270 species: Archae - 173; Bacteria - 9221; Metazoa - 3886; Fungi - 2053; Plants - 2922; Viruses - 150; Other Eukaryotes - 4886 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10665516..10667192 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62948.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||
| Length | 558 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNKEEAKR ALDIAEKKLS KNDYNRAKRY AKKAHRMYPN LVGLEQVLIM IDVYISATNK INGEADWYRV LGVDPLADDE AVKKRYRKLA LLLHPDKNRF 101: TGAEGAFKLI LEAWDLLSDK SQRSSYDQKR KSNQVKQRTS GMQKPKRSST PKPTESDKPA SSYGPTPPPE PRPKRRPRPN IPEPDIPMPM PTRHKPKSKP 201: DISLTTVKVG TFWTVCNRCK TYCEFMRASC LNKTVPCPNC GKYFIATVIP SELVNGRLVI RLSPCNQSTW KKASDDTSST SAMAKTVPER VKRWFDPMPE 301: MDSSTQKIGT FWTVCSRCKT HCKLVRANHL NKTFPCPNCS QEFVAAEMII EVINGGPVIK LSPSVQSNSK RTRDASSTTS ASDKAQRTAY QKEEVLKREK 401: IDPDVASAAT GENVKVAETL FKEPMTTGNE NSTTEEGIVK ESETLCKEPM TTGNENSTTE EGNVKEAETF FEEPMTTGNV KEVETLFEEP MTTDNENSTP 501: EAERLFKKPM STGDENSTHE AQRLFKKPMT TGNANSNLEA QRCFLRIWQR EMQSLLLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)