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AT4G19530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.691
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.
Computational
Description (TAIR10)
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 17572 Blast hits to 11989 proteins in 539 species: Archae - 6; Bacteria - 936; Metazoa - 1722; Fungi - 81; Plants - 14067; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
Protein Annotations
EMBL:AL021768EMBL:AL161551EMBL:CP002687EnsemblPlants:AT4G19530EnsemblPlants:AT4G19530.1entrez:827695Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:827695GO:GO:0009870GO:GO:0043531Gramene:AT4G19530.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF157HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT4G19530ncoils:CoilOMA:MIYISDSPfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PhylomeDB:O49471PIR:T06146PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_193688.1SMART:SM00255SMR:O49471
STRING:3702.AT4G19530.1SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G19530UniGene:At.32809UniProt:O49471
Coordinates (TAIR10) chr4:+:10651962..10657090
Molecular Weight (calculated) 132514.00 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.37
Length 1167 amino acids
Sequence (TAIR10)
(BLAST)
0001: MATSSSVVSS VPQQHQVFLN FRGDELRNNF VSHLDKALRG KQINVFIDEA VEKGENLDNL FKEIEKSRIA LAIISQKYTE SKWCLNELVK MKELEGKLVT
0101: IPIFYNVEPA TVRYQKEAFG AALTKTQEND SDGQMKKWKE ALTYVSLLVG FPFNSKSKEK ETTLIDKIVD AVLQKLSKIS SEESTSGSVD QGRGEEVEEA
0201: KADKISGLNQ RLKELEEKVA ITGDKRDETR IVEVVGMPGI GKSTLLKAFY ETWKTRFLSS ALLQNISELV KAMGLGRLTG MLLKELLPDE NIDEETYEPY
0301: KEKLLKNTVF IVLDGISDET HIQKLLKDHR KWAKKGSKIV IARRAVTRDL LHEDSMVRYT YFVPLLSHRD GLNHFCHYAF RHFAAHQNNK EAFMKESKEF
0401: VRYARGHPLI LKLLGEELRE KSLSYWEEKL KSLPKSLSQN IRDRVLQVTY DELSQVQKDA FLDIACFRSH DLVYVKSLLD SSGPAFSKAT VTIDALKDMF
0501: MIYISDSRVE MHDLLYTFAM ELGPEARDDD GRGRHRIWHH HNQDNKGRLN RLLKRPGGST SVRSFFLDMY VMKTDVTLGT DYLKNMRNLR YLKFYSSHCP
0601: QECTPKENIH IPGELELPLE EVRCLHWLNF PKDELPQDFI PKNLVDLKLP YSKIRQIWRE EKDAPKLRWV DLNHSSKLEN LSGLSQALNL ERLNLEGCTA
0701: LKTLLLGPEN MASLVFLNLK GCTGLESLPK INLRSLKTLI LSNCSNLEEF WVISETLYTL YLDGTAIKTL PQDMVKLTSL VKLYMKDCEM LVKLPEEFDK
0801: LKVLQELVCS GCKRLSSLPD VMKNMQCLQI LLLDGTAITK IPHISSLERL CLSRNEKISC LSNDIRLLSQ LKWLDLKYCT KLVSIPELPT NLQCLDANGC
0901: ESLTTVANPL ATHLPTEQIH STFIFTNCDK LDRTAKEGFV PEALFSTCFP GCEVPSWFCH EAVGSVLKLN LLPHWNENRF VGIALCAVVG SLPNCQEQTN
1001: SCSVTCTFNI ASKDSKKGDP YKISFDRLVG RWNKHGNKLD KKGNKLKKTE SDHVFICYTR CSNSIKCLQD QHSGTCTPTE AFLEFGVTDK ESRLEVLKCG
1101: LRLVYASDEP QKTNSDMDLS LSSSDSTPTR NGSSNTTTSS GSVSTNTIRE EDSNILHEAQ SQNGRGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)