AT4G19530.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.924 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 17572 Blast hits to 11989 proteins in 539 species: Archae - 6; Bacteria - 936; Metazoa - 1722; Fungi - 81; Plants - 14067; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:10651962..10657090 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132514.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1167 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATSSSVVSS VPQQHQVFLN FRGDELRNNF VSHLDKALRG KQINVFIDEA VEKGENLDNL FKEIEKSRIA LAIISQKYTE SKWCLNELVK MKELEGKLVT 0101: IPIFYNVEPA TVRYQKEAFG AALTKTQEND SDGQMKKWKE ALTYVSLLVG FPFNSKSKEK ETTLIDKIVD AVLQKLSKIS SEESTSGSVD QGRGEEVEEA 0201: KADKISGLNQ RLKELEEKVA ITGDKRDETR IVEVVGMPGI GKSTLLKAFY ETWKTRFLSS ALLQNISELV KAMGLGRLTG MLLKELLPDE NIDEETYEPY 0301: KEKLLKNTVF IVLDGISDET HIQKLLKDHR KWAKKGSKIV IARRAVTRDL LHEDSMVRYT YFVPLLSHRD GLNHFCHYAF RHFAAHQNNK EAFMKESKEF 0401: VRYARGHPLI LKLLGEELRE KSLSYWEEKL KSLPKSLSQN IRDRVLQVTY DELSQVQKDA FLDIACFRSH DLVYVKSLLD SSGPAFSKAT VTIDALKDMF 0501: MIYISDSRVE MHDLLYTFAM ELGPEARDDD GRGRHRIWHH HNQDNKGRLN RLLKRPGGST SVRSFFLDMY VMKTDVTLGT DYLKNMRNLR YLKFYSSHCP 0601: QECTPKENIH IPGELELPLE EVRCLHWLNF PKDELPQDFI PKNLVDLKLP YSKIRQIWRE EKDAPKLRWV DLNHSSKLEN LSGLSQALNL ERLNLEGCTA 0701: LKTLLLGPEN MASLVFLNLK GCTGLESLPK INLRSLKTLI LSNCSNLEEF WVISETLYTL YLDGTAIKTL PQDMVKLTSL VKLYMKDCEM LVKLPEEFDK 0801: LKVLQELVCS GCKRLSSLPD VMKNMQCLQI LLLDGTAITK IPHISSLERL CLSRNEKISC LSNDIRLLSQ LKWLDLKYCT KLVSIPELPT NLQCLDANGC 0901: ESLTTVANPL ATHLPTEQIH STFIFTNCDK LDRTAKEGFV PEALFSTCFP GCEVPSWFCH EAVGSVLKLN LLPHWNENRF VGIALCAVVG SLPNCQEQTN 1001: SCSVTCTFNI ASKDSKKGDP YKISFDRLVG RWNKHGNKLD KKGNKLKKTE SDHVFICYTR CSNSIKCLQD QHSGTCTPTE AFLEFGVTDK ESRLEVLKCG 1101: LRLVYASDEP QKTNSDMDLS LSSSDSTPTR NGSSNTTTSS GSVSTNTIRE EDSNILHEAQ SQNGRGL |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)