AT4G19500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157), Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7; Bacteria - 464; Metazoa - 257; Fungi - 40; Plants - 18821; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10625787..10630140 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 148984.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1309 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASFCGSRR YDVFPSFSKV DVRRSFLAHL LKELDRRLIN TFTDHGMERN LPIDAELLSA IAESRISIVI FSKNYASSTW CLDELVEIHT CYKELAQIVV 0101: PVFFNVHPSQ VKKQTGEFGK VFGKTCKGKP ENRKLRWMQA LAAVANIAGY DLQNWPDEAV MIEMVADDVS KKLFKSSNDF SDIVGIEAHL EAMSSILRLK 0201: SEKARMVGIS GPSGIGKTTI AKALFSKLSP QFHLRAFVTY KRTNQDDYDM KLCWIEKFLS EILGQKDLKV LDLGAVEQSL MHKKVLIILD DVDDLELLKT 0301: LVGQTGWFGF GSRIVVITQD RQLLKAHDIN LIYEVAFPSA HLALEIFCQS AFGKIYPPSD FRELSVEFAY LAGNLPLDLR VLGLAMKGKH REEWIEMLPR 0401: LRNDLDGKFK KTLRNYLPVI RKRVSNEEGG REKLKKGNKK LDLDEEFPGG EIYSDEIPSP TSNWKDTDDF DSGDIIPIIA DKSTTIIPNR RHSNDDWCSF 0501: CEFLRNRIPP LNPFKCSAND VIDFLRTRQV LGSTEALVDR LIFSSEAFGI KPEENPFRSQ AVTSYLKAAR DMTREKECIL VFSCHDNLDV DETSFIEAIS 0601: KELHKQGFIP LTYNLLGREN LDEEMLYGSR VGIMILSSSY VSSRQSLDHL VAVMEHWKTT DLVIIPIYFK VRLSDICGLK GRFEAAFLQL HMSLQEDRVQ 0701: KWKAAMSEIV SIGGHEWTKG SQFILAEEVV RNASLRLYLK SSKNLLGILA LLNHSQSTDV EIMGIWGIAG IGKTSIAREI FELHAPHYDF CYFLQDFHLM 0801: CQMKRPRQLR EDFISKLFGE EKGLGASDVK PSFMRDWFHK KTILLVLDDV SNARDAEAVI GGFGWFSHGH RIILTSRSKQ VLVQCKVKKP YEIQKLSDFE 0901: SFRLCKQYLD GENPVISELI SCSSGIPLAL KLLVSSVSKQ YITNMKDHLQ SLRKDPPTQI QEAFRRSFDG LDENEKNIFL DLACFFRGQS KDYAVLLLDA 1001: CGFFTYMGIC ELIDESLISL VDNKIEMPIP FQDMGRIIVH EEDEDPCERS RLWDSKDIVD VLTNNSGTEA IEGIFLDASD LTCELSPTVF GKMYNLRLLK 1101: FYCSTSGNQC KLTLPHGLDT LPDELSLLHW ENYPLVYLPQ KFNPVNLVEL NMPYSNMEKL WEGKKNLEKL KNIKLSHSRE LTDILMLSEA LNLEHIDLEG 1201: CTSLIDVSMS IPCCGKLVSL NMKDCSRLRS LPSMVDLTTL KLLNLSGCSE FEDIQDFAPN LEEIYLAGTS IRELPLSIRN LTELVTLDLE NCERLQEMPS 1301: LPVEIIRRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)