AT4G19440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10602006..10604483 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93171.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSHFISFS PMDLRRLSRA SYLFTRRLKF IAKSRKCFHT SRYLQQCVHR PDKSEETSSD RHLHERLSSV LSKRSLDYEQ CKQLITVLSP LEFDRLFPEF 101: RSKVNPKTAL DFFRLASDSF SFSFSLRSYC LLIGLLLDAN LLSAARVVLI RLINGNVPVL PCGLRDSRVA IADAMASLSL CFDEEIRRKM SDLLIEVYCT 201: QFKRDGCYLA LDVFPVLANK GMFPSKTTCN ILLTSLVRAN EFQKCCEAFD VVCKGVSPDV YLFTTAINAF CKGGKVEEAV KLFSKMEEAG VAPNVVTFNT 301: VIDGLGMCGR YDEAFMFKEK MVERGMEPTL ITYSILVKGL TRAKRIGDAY FVLKEMTKKG FPPNVIVYNN LIDSFIEAGS LNKAIEIKDL MVSKGLSLTS 401: STYNTLIKGY CKNGQADNAE RLLKEMLSIG FNVNQGSFTS VICLLCSHLM FDSALRFVGE MLLRNMSPGG GLLTTLISGL CKHGKHSKAL ELWFQFLNKG 501: FVVDTRTSNA LLHGLCEAGK LDEAFRIQKE ILGRGCVMDR VSYNTLISGC CGKKKLDEAF MFLDEMVKRG LKPDNYTYSI LICGLFNMNK VEEAIQFWDD 601: CKRNGMLPDV YTYSVMIDGC CKAERTEEGQ EFFDEMMSKN VQPNTVVYNH LIRAYCRSGR LSMALELRED MKHKGISPNS ATYTSLIKGM SIISRVEEAK 701: LLFEEMRMEG LEPNVFHYTA LIDGYGKLGQ MVKVECLLRE MHSKNVHPNK ITYTVMIGGY ARDGNVTEAS RLLNEMREKG IVPDSITYKE FIYGYLKQGG 801: VLEAFKGSDE ENYAAIIEGW NKLIQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)