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AT4G19410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectinacetylesterase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G45280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.-eggNOG:ENOG410XQKDeggNOG:KOG4287EMBL:AK222036EMBL:AK228936EMBL:AL022580EMBL:AL161550
EMBL:AY054531EMBL:AY064626EMBL:AY087371EMBL:CP002687EnsemblPlants:AT4G19410EnsemblPlants:AT4G19410.1entrez:827681
entrez:827682ESTHER:arath-f4jt64ExpressionAtlas:Q940J8GeneID:827682Genevisible:Q940J8GO:GO:0005576GO:GO:0005618
GO:GO:0009505GO:GO:0009506GO:GO:0016020GO:GO:0016787GO:GO:0071555hmmpanther:PTHR21562hmmpanther:PTHR21562:SF4
HOGENOM:HOG000238558IntAct:Q940J8InterPro:IPR004963PANTHER:PTHR21562PaxDb:Q940J8Pfam:PF03283Pfam:Q940J8
PhylomeDB:Q940J8PIR:T05824PRIDE:Q940J8PRO:PR:Q940J8ProteinModelPortal:Q940J8Proteomes:UP000006548RefSeq:NP_567585.1
SMR:Q940J8STRING:3702.AT4G19410.2TAIR:AT4G19410TMHMM:TMhelixUniGene:At.22429UniProt:Q940J8
Coordinates (TAIR10) chr4:-:10582188..10584766
Molecular Weight (calculated) 42127.60 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.09
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRLKQCWSS LLVLAVLVIG TGAVPITYLQ SAVAKGAVCL DGSAPAYHFD KGFGSGVNNW IVHMEGGGWC TDVASCNERK GTMKGSSKFM NKDFGFSGIL
101: GGKQSTNPDF YNWNRIKVRY CDGSSFTGNV EAVNPANKLF FRGARVWRAV VDDLMAKGMK NAQNAILSGC SAGALAAILH CDTFRAILPR TASVKCVSDA
201: GYFIHGKDIT GGSYIQSYYS KVVALHGSAK SLPVSCTSKM KPELCFFPQY VVPSMRTPLF VINAAFDSWQ IKNVLAPTAV DKGKEWKNCK LDLKKCSAAQ
301: LKTVQGFRDQ MMRALSPVHS TPSRGLFLDS CHAHCQGGSA ASWSGDKGPQ VANTRIAKAV GNWFYGRSAF QKIDCPSPTC NPTCPAISTE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)