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AT4G19220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 48464 Blast hits to 12375 proteins in 167 species: Archae - 0; Bacteria - 4; Metazoa - 37; Fungi - 15; Plants - 47999; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL021687EMBL:AL161550EMBL:CP002687EnsemblPlants:AT4G19220EnsemblPlants:AT4G19220.1
entrez:827662Gene3D:1.25.40.10GeneID:827662Genevisible:O49680GO:GO:0005739Gramene:AT4G19220.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF402InParanoid:O49680InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G19220PaxDb:O49680Pfam:O49680
Pfam:PF01535Pfam:PF13041Pfscan:PS51375PhylomeDB:O49680PIR:T04443PRO:PR:O49680PROSITE:PS51375
ProteinModelPortal:O49680Proteomes:UP000006548RefSeq:NP_193657.1SMR:O49680STRING:3702.AT4G19220.1TAIR:AT4G19220TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65402UniProt:O49680
Coordinates (TAIR10) chr4:-:10505266..10508121
Molecular Weight (calculated) 102946.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.01
Length 932 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLVMVRSST ISPKSLRLYC SGHIIDSLRH SISRWNSPSG YCSNYYFSKR KHKRHFTSSV LSPVTPIVHN LFDELPEREN RTMESSFMFL RDVLRSFMMR
101: TETETPRSVH CFALKCGLLQ DLATSSKLLT FYGRTGELVS SSCLFDELKE KDVIVWNSMI TALNQNGRYI AAVGLFIEMI HKGNEFDSTT LLLAASALSS
201: LHLSRKCSML HCLAIETGLV GDSSLCNALM NLYAKGENLS SAECVFTHME HRDIVSWNTI MTKCLANGHP RKSLQYFKSM TGSGQEADTV TFSCVISACS
301: SIEELTLGES LHGLVIKSGY SPEAHVSVGN SIISMYSKCG DTEAAETVFE ELVCRDVISS NAILNGFAAN GMFEEAFGIL NQMQSVDKIQ PDIATVVSIT
401: SICGDLSFSR EGRAVHGYTV RMEMQSRALE VINSVIDMYG KCGLTTQAEL LFKTTTHRDL VSWNSMISAF SQNGFTHKAK NLFKEVVSEY SCSKFSLSTV
501: LAILTSCDSS DSLIFGKSVH CWLQKLGDLT SAFLRLETMS ETRDLTSWNS VISGCASSGH HLESLRAFQA MSREGKIRHD LITLLGTISA SGNLGLVLQG
601: RCFHGLAIKS LRELDTQLQN TLITMYGRCK DIESAVKVFG LISDPNLCSW NCVISALSQN KAGREVFQLF RNLKLEPNEI TFVGLLSAST QLGSTSYGMQ
701: AHCHLIRRGF QANPFVSAAL VDMYSSCGML ETGMKVFRNS GVNSISAWNS VISAHGFHGM GEKAMELFKE LSSNSEMEPN KSSFISLLSA CSHSGFIDEG
801: LSYYKQMEEK FGVKPVTEHR VWIVDMLGRA GKLREAYEFI TGIGEPQKAG VWGALLSACN YHGDTKLGKE VAEVLFEMEP DNASYYISLA NTYVGLGGWE
901: EAVRLRKMVE DNALKKLPGY SVIDVRCLDT VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)