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AT4G19170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28018391 (2016): plastid plastid stroma plastoglobules
  • PMID:24872594 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nine-cis-epoxycarotenoid dioxygenase 4
Curator
Summary (TAIR10)
chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase
Computational
Description (TAIR10)
nine-cis-epoxycarotenoid dioxygenase 4 (NCED4); LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 5 (TAIR:AT1G30100.1); Has 2918 Blast hits to 2864 proteins in 491 species: Archae - 16; Bacteria - 796; Metazoa - 323; Fungi - 173; Plants - 887; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G19170-MONOMERBioGrid:12948EC:1.14.99.-eggNOG:COG3670eggNOG:KOG1285EMBL:AK227175EMBL:AL021687
EMBL:AL161550EMBL:AY056789EMBL:AY136353EMBL:BT008785EMBL:CP002687EnsemblPlants:AT4G19170EnsemblPlants:AT4G19170.1
entrez:827655GeneID:827655Genevisible:O49675GO:GO:0009507GO:GO:0010287GO:GO:0016702GO:GO:0046872
Gramene:AT4G19170.1hmmpanther:PTHR10543hmmpanther:PTHR10543:SF46HOGENOM:HOG000254836InParanoid:O49675IntAct:O49675InterPro:IPR004294
iPTMnet:O49675KEGG:ath:AT4G19170KO:K09840OMA:TAHPHRDPANTHER:PTHR10543PaxDb:O49675Pfam:O49675
Pfam:PF03055PhylomeDB:O49675PIR:T04438PRIDE:O49675PRO:PR:O49675ProteinModelPortal:O49675Proteomes:UP000006548
RefSeq:NP_193652.1SMR:O49675STRING:3702.AT4G19170.1TAIR:AT4G19170tair10-symbols:CCD4tair10-symbols:NCED4UniGene:At.1927
UniGene:At.67316UniProt:O49675
Coordinates (TAIR10) chr4:+:10481835..10483622
Molecular Weight (calculated) 65605.40 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.22
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)