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AT4G19160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:827654eggNOG:ENOG410IJ8JeggNOG:ENOG4111KYKEMBL:AY050814
EMBL:AY091416EMBL:CP002687EnsemblPlants:AT4G19160EnsemblPlants:AT4G19160.1
entrez:827654ExpressionAtlas:Q949Y2GeneID:827654Gramene:AT4G19160.1
hmmpanther:PTHR31350hmmpanther:PTHR31350:SF4HOGENOM:HOG000030162InterPro:IPR011990
InterPro:IPR032698KEGG:ath:AT4G19160Pfam:PF13369Pfam:PF13371
PhylomeDB:Q949Y2Proteomes:UP000006548RefSeq:NP_567578.1SMR:Q949Y2
STRING:3702.AT4G19160.2SUPFAM:SSF48452TAIR:AT4G19160UniGene:At.1926
UniProt:Q949Y2
Coordinates (TAIR10) chr4:+:10478613..10479947
Molecular Weight (calculated) 34954.00 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.07
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MKERESVQDQ SDPSETDSEE LLQLDGKSIS EWVSEIDAIS KEVEAELVSR DIGCHLVQVL EAVNTVLFDL RGFKRTSITL DPENSYLHSV LNCRCSTAFL
101: ISVIYIEVCK RLNVPIVGSP VGEDFLIWPK TEYPEELFKA TSGQSLFSIV NGRCVDDPGS MASDLTAKSL QDLDMATNRD IIGIALANLI RLHWRRASKS
201: SHGLMLTSPL SQLNNISSSN FPLLRPQDLR LAIAAAERLL ILQPHNWALR RDLGMMLYYD RQYGEAVQEL SICMAFAPPE EEAVLEPFVE RLHLLRLISS
301: LKPLGSDRLT VP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)