suba logo
AT4G19030.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NOD26-like major intrinsic protein 1
Curator
Summary (TAIR10)
an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.
Computational
Description (TAIR10)
NOD26-like major intrinsic protein 1 (NLM1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 1;2 (TAIR:AT4G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12934eggNOG:COG0580eggNOG:KOG0223EMBL:AL021711EMBL:AL161550EMBL:AY063796EMBL:AY084497
EMBL:AY117197EMBL:CP002687EMBL:Y07625EnsemblPlants:AT4G19030EnsemblPlants:AT4G19030.1entrez:827641Gene3D:1.20.1080.10
GeneID:827641Genevisible:Q8VZW1GO:GO:0005886GO:GO:0006833GO:GO:0015105GO:GO:0015250GO:GO:0015254
GO:GO:0015700GO:GO:0015793GO:GO:0016021GO:GO:0031347GO:GO:0046685Gramene:AT4G19030.1hmmpanther:PTHR19139
hmmpanther:PTHR19139:SF144HOGENOM:HOG000288286InParanoid:Q8VZW1IntAct:Q8VZW1InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271
KEGG:ath:AT4G19030KO:K09874OMA:GYGNAREPANTHER:PTHR19139PaxDb:Q8VZW1Pfam:PF00230Pfam:Q8VZW1
PhylomeDB:Q8VZW1PIR:H85214PIR:T05040PRIDE:Q8VZW1PRINTS:PR00783PRO:PR:Q8VZW1PROSITE:PS00221
ProteinModelPortal:Q8VZW1Proteomes:UP000006548RefSeq:NP_567572.1scanprosite:PS00221SMR:Q8VZW1STRING:3702.AT4G19030.1SUPFAM:SSF81338
TAIR:AT4G19030tair10-symbols:AT-NLM1tair10-symbols:ATNLM1tair10-symbols:NIP1;1tair10-symbols:NLM1TCDB:1.A.8.12.8TIGRfam:TIGR00861
TIGRFAMs:TIGR00861TMHMM:TMhelixUniGene:At.5405UniProt:Q8VZW1
Coordinates (TAIR10) chr4:-:10421728..10423409
Molecular Weight (calculated) 31716.80 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.49
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MADISGNGYG NAREEVVMVN LKDEVEHQQE MEDIHNPRPL KKQDSLLSVS VPFLQKLIAE FLGTYFLVFT GCASVVVNMQ NDNVVTLPGI AIVWGLTIMV
101: LIYSLGHISG AHINPAVTIA FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDHDV CSGKHDVFIG SSPVGSDLQA FTMEFIVTFY LMFIISGVAT
201: DNRAIGELAG LAIGSTVLLN VLIAAPVSSA SMNPGRSLGP ALVYGCYKGI WIYLVAPTLG AIAGAWVYNT VRYTDKPLRE ITKSGSFLKT VRIGST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)