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AT4G18975.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE55eggNOG:ENOG410YABSEMBL:AK221620EMBL:AL021711
EMBL:AL161549EMBL:BT012648EMBL:CP002687EnsemblPlants:AT4G18975
EnsemblPlants:AT4G18975.1EnsemblPlants:AT4G18975.3EnsemblPlants:AT4G18975.4entrez:827633
GeneID:827633Genevisible:Q2V3H0GO:GO:0009507hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF314HOGENOM:HOG000242355InParanoid:Q2V3H0InterPro:IPR002885
KEGG:ath:AT4G18975OMA:WNMILHTPaxDb:Q2V3H0Pfam:Q2V3H0
PhylomeDB:Q2V3H0PIR:T05034PRIDE:Q2V3H0PRO:PR:Q2V3H0
ProteinModelPortal:Q2V3H0Proteomes:UP000006548RefSeq:NP_001031667.1RefSeq:NP_001119009.1
RefSeq:NP_001190768.1RefSeq:NP_567571.1STRING:3702.AT4G18975.1TAIR:AT4G18975
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.23239UniProt:Q2V3H0
Coordinates (TAIR10) chr4:-:10392170..10393665
Molecular Weight (calculated) 33254.30 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.45
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MALCNLNPTQ GIFPLQGLSK SQEFICFSLL QSPRCGSYSS LKTKRFGFCI RSKFSEKEAG KLDRGYVATV NSKEIKKVGK KEHHLWKKND SAGSGQKALN
101: LVRMLSGLPN EKEAVYGALN KWVAWEVEFP IIAAAKALQI LRKRSQWHRV IQLAKWMLSK GQGATMGTYD ILLLAFDMDE RADEAESLWN MILHTHTRSI
201: PRRLFARMIA LYAHHDLHDK VIEVFADMEE LKVSPDEDSA RRVARAFREL NQEENRKLIL RRYLSEYKYI YFNGERVRVK RYFSEDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)