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AT4G18970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:16729891 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1350-MONOMERBioCyc:ARA:GQT-1351-MONOMEREC:3.1.1.-eggNOG:ENOG410IJRW
eggNOG:ENOG410YD3PEMBL:AL021711EMBL:AL161549EMBL:AY059733
EMBL:AY088196EMBL:AY113950EMBL:CP002687EnsemblPlants:AT4G18970
EnsemblPlants:AT4G18970.1entrez:827632ExpressionAtlas:Q93YW8Gene3D:3.40.50.1110
GeneID:827632Genevisible:Q93YW8GO:GO:0005576GO:GO:0016042
GO:GO:0016788hmmpanther:PTHR22835hmmpanther:PTHR22835:SF120HOGENOM:HOG000237649
InParanoid:Q93YW8InterPro:IPR001087InterPro:IPR013830PaxDb:Q93YW8
Pfam:PF00657Pfam:Q93YW8PhylomeDB:Q93YW8PRIDE:Q93YW8
PRO:PR:Q93YW8ProteinModelPortal:Q93YW8Proteomes:UP000006548RefSeq:NP_567570.1
STRING:3702.AT4G18970.2TAIR:AT4G18970UniGene:At.22915UniGene:At.67308
UniProt:Q93YW8
Coordinates (TAIR10) chr4:-:10389308..10390808
Molecular Weight (calculated) 39600.60 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.19
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MARVCVMMMA MAIAMAMNIA MGDPIAPCYF IFGDSLVDSG NNNRLTSLAR ANYFPYGIDF QYGPTGRFSN GKTTVDVITE LLGFDDYITP YSEARGEDIL
101: RGVNYASAAA GIREETGRQL GARITFAGQV ANHVNTVSQV VNILGDENEA ANYLSKCIYS IGLGSNDYLN NYFMPVYYST GSQYSPDAYA NDLINRYTEQ
201: LRIMYNNGAR KFALVGIGAI GCSPNELAQN SRDGVTCDER INSANRIFNS KLVSLVDHFN QNTPGAKFTY INAYGIFQDM VANPSRYGFR VTNAGCCGVG
301: RNNGQITCLP GQAPCLNRDE YVFWDAFHPG EAANVVIGSR SFQRESASDA HPYDIQQLAR L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)