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AT4G18920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1264)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1264); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT5G45690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II9XeggNOG:ENOG410XS75EMBL:AL021711EMBL:AL161549
EMBL:AY088641EMBL:CP002687EMBL:DQ446850EMBL:DQ653208
EnsemblPlants:AT4G18920EnsemblPlants:AT4G18920.1entrez:827627GeneID:827627
Gramene:AT4G18920.1hmmpanther:PTHR31360hmmpanther:PTHR31360:SF1HOGENOM:HOG000176802
InterPro:IPR010686KEGG:ath:AT4G18920OMA:CAVYDSNPaxDb:A0MF82
PaxDb:O49407PaxDb:Q8L946Pfam:PF06884PhylomeDB:Q1PE68
PIR:T05029Proteomes:UP000006548RefSeq:NP_567567.1STRING:3702.AT4G18920.1
TAIR:AT4G18920UniGene:At.32856UniProt:Q1PE68
Coordinates (TAIR10) chr4:+:10368784..10370086
Molecular Weight (calculated) 27749.50 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.44
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSDKVPVA CPASSGDGKE PMGNPTKTTT AMLEKGTAMM QSMKPIRQMS LHVCSFACYS HDPGRQIEVH IYGHRVNQDF LQCAVYDSNS SKAHLIGIEY
101: IVSEKLFESL SPEEQKLWHS HDYEIQMALL VTPRVPELVA KPELKNLAKS YGKFWCTWQI DRGDKLPLGV PSLMVSPQDV NLGRIKPELV KKRDEEHGIS
201: TESLKPSRDG ICGPEKKNLV ADYWVRFRKG FALDVVETDM KRTAPFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)