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AT4G18820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G45720.1); Has 12659 Blast hits to 12635 proteins in 2803 species: Archae - 377; Bacteria - 7447; Metazoa - 406; Fungi - 391; Plants - 312; Viruses - 22; Other Eukaryotes - 3704 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2812eggNOG:ENOG410IUKKEMBL:AL035526EMBL:AL161549
EMBL:CP002687EnsemblPlants:AT4G18820EnsemblPlants:AT4G18820.1entrez:827616
Gene3D:3.40.50.300GeneID:827616Genevisible:F4JRP0GO:GO:0003677
GO:GO:0003887GO:GO:0005524GO:GO:0006260GO:GO:0009360
Gramene:AT4G18820.1hmmpanther:PTHR11669hmmpanther:PTHR11669:SF16InParanoid:F4JRP0
InterPro:IPR003593InterPro:IPR008921InterPro:IPR012763InterPro:IPR027417
iPTMnet:F4JRP0KEGG:ath:AT4G18820ncoils:CoilOMA:EIRCETK
PaxDb:F4JRP0Pfam:F4JRP0Pfam:PF13177PIR:T04874
PRIDE:F4JRP0PRO:PR:F4JRP0ProteinModelPortal:F4JRP0Proteomes:UP000006548
RefSeq:NP_193617.3SMART:SM00382SMR:F4JRP0STRING:3702.AT4G18820.1
SUPFAM:SSF48019SUPFAM:SSF52540TAIR:AT4G18820TIGRfam:TIGR02397
TIGRFAMs:TIGR02397UniGene:At.24326UniProt:F4JRP0
Coordinates (TAIR10) chr4:+:10330371..10334090
Molecular Weight (calculated) 121799.00 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.66
Length 1097 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTTTTTTTTR VASSSSTRNN RILKDANGDI GEHLRNHIHL TNCIHLKNNM HKQSPVLTDR ALMRDLIVLQ RSRSLRDPSA SPPAWNTPPS VVDLLPKKGD
0101: LVEGGRRSVD LKKSSRRLSA LSGSSPVVNF GTSKVTPSDE RSGPVSGERD SGRRVKREES SRKSYRIGDD YQNVNEVVSH GSGSKASRRL SRVNDAMVKT
0201: LSDQLNEVVV GDSDDVVSSN VRPRVRYGGG GGGGNTRGCA GGMSRPKRRK FRGTRRVRGK SRDTGGGKSE MSVASNTLPQ VEKHDGEKEG FGEQNMTKAC
0301: GIPFNWSRIH HRGKTFLDKA GRSLSCGMSD SKGGRKGETN ERNGSDKMMI QSDDDSSSFI GSDGEALPLL VDSGENDGWV HDYSGELGIF ADSLLKNDED
0401: SDLASEGRSG EKKHKKKSHV NARHRHRQQH QSLTEKYTPK TFRDLLGQNL VVQALSNAVA RRKLGLLYVF HGPNGTGKTS CARIFARALN CHSMEQPKPC
0501: GTCSSCVSHD MGKSWNIREV GPVGNYDFEK IMDLLDGNVM VSSQSPRVFI FDDCDTLSSD CWNALSKVVD RAAPRHVVFI LVCSSLDVLP HVIISRCQKF
0601: FFPKLKDADI VYSLQWIASK EEIEIDKDAL KLIASRSDGS LRDAEMTLEQ LSLLGQRISV PLVQELVGLV SDEKLVDLLD LALSADTVNT VKNLRTIMET
0701: SVEPLALMSQ LATVITDILA GSYDFTKDQH KRKFFRRQPL PKEDMEKLRQ ALKTLSEAEK QLRVSNDKLT WLTAALLQLA PDQNYLLQRS STADTGGRES
0801: SDHHLDPSSD AAGGRSSGLD RRRGDSRKNR PAVEEIWLEV IEKLRVNGLR EFLYKEGRIV SLNLGSAPTV HLMFSSPLTK STAEKFRSHI MQAFEAVLES
0901: PVTIEIRCET KKDPRNNVHH HHHHPTVKDK SLPQSLALIG HDYNIDGSGR SEIVEVTESN GQRRQQQKQQ EEERTEPVGS SALARARRKH LEASQSQNQS
1001: QSIVRGKVSL AHVIQQADGC SLQNGWSKRK AVSIAEKLEQ ENLRLEPRSR SLLCWKSSRG TRRKATRLKV RTRRARPHTL LKLVSCGKCL STRSPTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)