AT4G18790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.483 golgi 0.280 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NRAMP metal ion transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Nramp2 family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NRAMP5; FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP metal ion transporter 2 (TAIR:AT1G47240.1); Has 5000 Blast hits to 4958 proteins in 1554 species: Archae - 111; Bacteria - 3609; Metazoa - 367; Fungi - 258; Plants - 341; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10317785..10319660 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58784.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA 101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE 201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA 301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT 401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS 501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)