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AT4G18770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 98
Curator
Summary (TAIR10)
MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.
Computational
Description (TAIR10)
myb domain protein 98 (MYB98); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 118 (TAIR:AT3G27785.1); Has 10125 Blast hits to 8427 proteins in 562 species: Archae - 0; Bacteria - 3; Metazoa - 1026; Fungi - 830; Plants - 5955; Viruses - 3; Other Eukaryotes - 2308 (source: NCBI BLink).
Protein Annotations
BioGrid:12904eggNOG:COG5147eggNOG:KOG0048EMBL:AF176003EMBL:AL035526EMBL:AL161549EMBL:CP002687
EMBL:DQ198082EMBL:DQ446849EnsemblPlants:AT4G18770EnsemblPlants:AT4G18770.1entrez:827611Gene3D:1.10.10.60GeneID:827611
Genevisible:Q9S7L2GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009553GO:GO:0010183
GO:GO:0045697Gramene:AT4G18770.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF570InParanoid:Q9S7L2InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT4G18770KO:K09422MINT:MINT-8061338OMA:DYPPTETPaxDb:Q9S7L2Pfam:PF13921
Pfam:Q9S7L2Pfscan:PS51294PhylomeDB:Q9S7L2PIR:T04869PRIDE:Q9S7L2PRO:PR:Q9S7L2PROSITE:PS51294
ProteinModelPortal:Q9S7L2Proteomes:UP000006548RefSeq:NP_193612.1SMART:SM00717SMR:Q9S7L2STRING:3702.AT4G18770.1SUPFAM:SSF46689
TAIR:AT4G18770tair10-symbols:AtMYB98tair10-symbols:MYB98UniGene:At.66621UniGene:At.72359UniProt:Q9S7L2
Coordinates (TAIR10) chr4:+:10311068..10312557
Molecular Weight (calculated) 50118.70 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.91
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MENFVDENGF ASLNQNIFTR DQEHMKEEDF PFEVVDQSKP TSFLQDFHHL DHDHQFDHHH HHGSSSSHPL LSVQTTSSCI NNAPFEHCSY QENMVDFYET
101: KPNLMNHHHF QAVENSYFTR NHHHHQEINL VDEHDDPMDL EQNNMMMMRM IPFDYPPTET FKPMNFVMPD EISCVSADND CYRATSFNKT KPFLTRKLSS
201: SSSSSSWKET KKSTLVKGQW TAEEDRVLIQ LVEKYGLRKW SHIAQVLPGR IGKQCRERWH NHLRPDIKKE TWSEEEDRVL IEFHKEIGNK WAEIAKRLPG
301: RTENSIKNHW NATKRRQFSK RKCRSKYPRP SLLQDYIKSL NMGALMASSV PARGRRRESN NKKKDVVVAV EEKKKEEEVY GQDRIVPECV FTDDFGFNEK
401: LLEEGCSIDS LLDDIPQPDI DAFVHGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)