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AT4G18750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At4g18750-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.
Computational
Description (TAIR10)
DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK221529EMBL:AL035526EMBL:AL161549EMBL:CP002687EnsemblPlants:AT4G18750
EnsemblPlants:AT4G18750.1entrez:827609Gene3D:1.25.40.10GeneID:827609Genevisible:Q9SN39GO:GO:0003723GO:GO:0006397
GO:GO:0008270GO:GO:0009507GO:GO:0010087GO:GO:0010305GO:GO:0010588GO:GO:0048366GO:GO:1900865
Gramene:AT4G18750.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF105HOGENOM:HOG000237570InParanoid:Q9SN39InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867iPTMnet:Q9SN39KEGG:ath:AT4G18750OMA:CNTLLDMPaxDb:Q9SN39Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q9SN39Pfscan:PS51375PhylomeDB:Q9SN39PIR:T04867PRIDE:Q9SN39PRO:PR:Q9SN39
PROSITE:PS51375ProteinModelPortal:Q9SN39Proteomes:UP000006548RefSeq:NP_193610.1SMR:Q9SN39STRING:3702.AT4G18750.1TAIR:AT4G18750
tair10-symbols:DOT4TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.54400UniProt:Q9SN39
Coordinates (TAIR10) chr4:+:10304850..10307465
Molecular Weight (calculated) 97703.70 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.10
Length 871 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLVTNLSS SSFCFFSSPH LQNQKEIRSG VRVRKYVIFN RASLRTVSDC VDSITTFDRS VTDANTQLRR FCESGNLENA VKLLCVSGKW DIDPRTLCSV
101: LQLCADSKSL KDGKEVDNFI RGNGFVIDSN LGSKLSLMYT NCGDLKEASR VFDEVKIEKA LFWNILMNEL AKSGDFSGSI GLFKKMMSSG VEMDSYTFSC
201: VSKSFSSLRS VHGGEQLHGF ILKSGFGERN SVGNSLVAFY LKNQRVDSAR KVFDEMTERD VISWNSIING YVSNGLAEKG LSVFVQMLVS GIEIDLATIV
301: SVFAGCADSR LISLGRAVHS IGVKACFSRE DRFCNTLLDM YSKCGDLDSA KAVFREMSDR SVVSYTSMIA GYAREGLAGE AVKLFEEMEE EGISPDVYTV
401: TAVLNCCARY RLLDEGKRVH EWIKENDLGF DIFVSNALMD MYAKCGSMQE AELVFSEMRV KDIISWNTII GGYSKNCYAN EALSLFNLLL EEKRFSPDER
501: TVACVLPACA SLSAFDKGRE IHGYIMRNGY FSDRHVANSL VDMYAKCGAL LLAHMLFDDI ASKDLVSWTV MIAGYGMHGF GKEAIALFNQ MRQAGIEADE
601: ISFVSLLYAC SHSGLVDEGW RFFNIMRHEC KIEPTVEHYA CIVDMLARTG DLIKAYRFIE NMPIPPDATI WGALLCGCRI HHDVKLAEKV AEKVFELEPE
701: NTGYYVLMAN IYAEAEKWEQ VKRLRKRIGQ RGLRKNPGCS WIEIKGRVNI FVAGDSSNPE TENIEAFLRK VRARMIEEGY SPLTKYALID AEEMEKEEAL
801: CGHSEKLAMA LGIISSGHGK IIRVTKNLRV CGDCHEMAKF MSKLTRREIV LRDSNRFHQF KDGHCSCRGF W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)