AT4G18750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10304850..10307465 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97703.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 871 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMLVTNLSS SSFCFFSSPH LQNQKEIRSG VRVRKYVIFN RASLRTVSDC VDSITTFDRS VTDANTQLRR FCESGNLENA VKLLCVSGKW DIDPRTLCSV 101: LQLCADSKSL KDGKEVDNFI RGNGFVIDSN LGSKLSLMYT NCGDLKEASR VFDEVKIEKA LFWNILMNEL AKSGDFSGSI GLFKKMMSSG VEMDSYTFSC 201: VSKSFSSLRS VHGGEQLHGF ILKSGFGERN SVGNSLVAFY LKNQRVDSAR KVFDEMTERD VISWNSIING YVSNGLAEKG LSVFVQMLVS GIEIDLATIV 301: SVFAGCADSR LISLGRAVHS IGVKACFSRE DRFCNTLLDM YSKCGDLDSA KAVFREMSDR SVVSYTSMIA GYAREGLAGE AVKLFEEMEE EGISPDVYTV 401: TAVLNCCARY RLLDEGKRVH EWIKENDLGF DIFVSNALMD MYAKCGSMQE AELVFSEMRV KDIISWNTII GGYSKNCYAN EALSLFNLLL EEKRFSPDER 501: TVACVLPACA SLSAFDKGRE IHGYIMRNGY FSDRHVANSL VDMYAKCGAL LLAHMLFDDI ASKDLVSWTV MIAGYGMHGF GKEAIALFNQ MRQAGIEADE 601: ISFVSLLYAC SHSGLVDEGW RFFNIMRHEC KIEPTVEHYA CIVDMLARTG DLIKAYRFIE NMPIPPDATI WGALLCGCRI HHDVKLAEKV AEKVFELEPE 701: NTGYYVLMAN IYAEAEKWEQ VKRLRKRIGQ RGLRKNPGCS WIEIKGRVNI FVAGDSSNPE TENIEAFLRK VRARMIEEGY SPLTKYALID AEEMEKEEAL 801: CGHSEKLAMA LGIISSGHGK IIRVTKNLRV CGDCHEMAKF MSKLTRREIV LRDSNRFHQF KDGHCSCRGF W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)