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AT4G18740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.962
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rho termination factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 186 Blast hits to 184 proteins in 65 species: Archae - 0; Bacteria - 29; Metazoa - 45; Fungi - 8; Plants - 65; Viruses - 9; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J29CeggNOG:ENOG41113ZYEMBL:CP002687EnsemblPlants:AT4G18740EnsemblPlants:AT4G18740.1entrez:827608ExpressionAtlas:F4JRN0
Gene3D:2.40.50.140GeneID:827608GO:GO:0005829GO:GO:0006353Gramene:AT4G18740.1hmmpanther:PTHR34449hmmpanther:PTHR34449:SF1
InParanoid:F4JRN0InterPro:IPR011112InterPro:IPR012340OMA:TTINGDRPaxDb:F4JRN0Pfam:PF07498PhylomeDB:F4JRN0
PRIDE:F4JRN0ProteinModelPortal:F4JRN0Proteomes:UP000006548RefSeq:NP_193609.2SMART:SM00959STRING:3702.AT4G18740.1SUPFAM:SSF68912
TAIR:AT4G18740UniGene:At.32871UniProt:F4JRN0
Coordinates (TAIR10) chr4:-:10303543..10304479
Molecular Weight (calculated) 27326.00 Da
IEP (calculated) 10.64
GRAVY (calculated) -0.82
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLALHCHCA YPLIKLGFMR AKSANHLHVR DTHSLPFALR FEQSLSRTTI NGDRSIWFQE KGGSSYTSMG RSKKGCVCCK KPSDRRTSNP SKSNQEEIIS
101: LLKRIQSSIS KGESRGVEEE KNSDESSKEK PLTKAILDVL EKSRKKTEGD TSVKEKPPKR QVELPRPPSS FVKRTPLSSS ASGPRGKLPV SNSDKALGKL
201: TKKEEKASLI ETMKLAELKE VAKNRGIKGY SKLRKSELLE LIRSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)