AT4G18670.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 60217 Blast hits to 20533 proteins in 968 species: Archae - 15; Bacteria - 2115; Metazoa - 6070; Fungi - 1014; Plants - 47629; Viruses - 97; Other Eukaryotes - 3277 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:10275918..10278491 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90840.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTKMMMKNT SLIFVLLFIT FFFTSISYSL SLTFNGDLSD NEVRLITQRQ LLYFRDEFGD RGENVDVDPS LVFENPRLRN AYIALQAWKQ AILSDPNNFT 101: TNWIGSDVCS YTGVYCAPAL DNRRIRTVAG IDLNHADIAG YLPQELGLLT DLALFHINSN RFCGTVPHRF NRLKLLFELD LSNNRFAGIF PTVVLQLPSL 201: KFLDLRFNEF EGPVPRELFS KDLDAIFINH NRFRFELPDN LGDSPVSVIV VANNHFHGCI PTSLGDMRNL EEIIFMENGF NSCLPSQIGR LKNVTVFDFS 301: FNELVGSLPA SIGGMVSMEQ LNVAHNRFSG KIPATICQLP RLENFTFSYN FFTGEPPVCL GLPGFDDRRN CLPARPAQRS PGQCAAFSSL PPVDCGSFGC 401: GRSTRPPVVV PSPPTTPSPG GSPPSPSISP SPPITVPSPP TTPSPGGSPP SPSIVPSPPS TTPSPGSPPT SPTTPTPGGS PPSSPTTPTP GGSPPSSPTT 501: PTPGGSPPSS PTTPSPGGSP PSPSISPSPP ITVPSPPSTP TSPGSPPSPS SPTPSSPIPS PPTPSTPPTP ISPGQNSPPI IPSPPFTGPS PPSSPSPPLP 601: PVIPSPPIVG PTPSSPPPST PTPVYSPPPP STGYPPPPPF TGYSPPSPPP PPPPTFSPSP SIPPPPPQTY SPFPPPPPPP PQTYYPPQPS PSQPPQSPIY 701: GTPPPSPIPY LPSPPQFASP PPPAPYYYSS PQPPPPPHYS LPPPTPTYHY ISPPPPPTPI HSPPPQSHPP CIEYSPPPPP TVHYNPPPPP SPAHYSPPPS 801: PPVYYYNSPP PPPAVHYSPP PPPVIHHSQP PPPPIYEGPL PPIPGISYAS PPPPPFY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)