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AT4G18630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF688)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT5G45850.1); Has 118 Blast hits to 95 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 3; Plants - 90; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWUMeggNOG:ENOG41104KKEMBL:AK117470EMBL:BT005405EMBL:CP002687EnsemblPlants:AT4G18630EnsemblPlants:AT4G18630.1
entrez:827597GeneID:827597Gramene:AT4G18630.1hmmpanther:PTHR33671hmmpanther:PTHR33671:SF3HOGENOM:HOG000064677IntAct:Q8GYP4
InterPro:IPR007789KEGG:ath:AT4G18630OMA:PKDDMATPfam:PF05097PhylomeDB:Q8GYP4Proteomes:UP000006548RefSeq:NP_193598.2
STRING:3702.AT4G18630.1TAIR:AT4G18630UniGene:At.32882UniProt:Q8GYP4
Coordinates (TAIR10) chr4:+:10257178..10258734
Molecular Weight (calculated) 54376.50 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.82
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)