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AT4G18610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 9 (LSH9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 307 Blast hits to 307 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT0NeggNOG:ENOG41108AVEMBL:AL035526EMBL:AL161549EMBL:BT010856EMBL:BT014677EMBL:CP002687
EnsemblPlants:AT4G18610EnsemblPlants:AT4G18610.1entrez:827595GeneID:827595Genevisible:Q9SN52GO:GO:0003677GO:GO:0005634
GO:GO:0006355GO:GO:0009299GO:GO:0009886Gramene:AT4G18610.1hmmpanther:PTHR31165hmmpanther:PTHR31165:SF10HOGENOM:HOG000239606
InParanoid:Q9SN52InterPro:IPR006936KEGG:ath:AT4G18610OMA:DRHTPTKPaxDb:Q9SN52Pfam:PF04852Pfam:Q9SN52
Pfscan:PS51697PhylomeDB:Q9SN52PIR:T04853PRIDE:Q9SN52PRO:PR:Q9SN52PROSITE:PS51697Proteomes:UP000006548
RefSeq:NP_193596.1TAIR:AT4G18610tair10-symbols:LSH9UniGene:At.32884UniProt:Q9SN52
Coordinates (TAIR10) chr4:+:10250794..10251369
Molecular Weight (calculated) 21745.70 Da
IEP (calculated) 10.46
GRAVY (calculated) -1.01
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)