AT4G18570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 41355 Blast hits to 22856 proteins in 1198 species: Archae - 106; Bacteria - 4898; Metazoa - 15706; Fungi - 4501; Plants - 9175; Viruses - 1532; Other Eukaryotes - 5437 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10231439..10234534 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71617.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAGKVRVTM GFHKSPSTKK TKDMPSPLPL PPPPPPPLKP PSSGSATTKP PINPSKPGFT RSFGVYFPRA SAQVHATAAA ASHNGVVSEL RRQVEELRER 101: EALLKTENLE VKLLRESVSV IPLLESQIAD KNGEIDELRK ETARLAEDNE RLRREFDRSE EMRRECETRE KEMEAEIVEL RKLVSSESDD HALSVSQRFQ 201: GLMDVSAKSN LIRSLKRVGS LRNLPEPITN QENTNKSISS SGDADGDIYR KDEIESYSRS SNSEELTESS SLSTVRSRVP RVPKPPPKRS ISLGDSTENR 301: ADPPPQKSIP PPPPPPPPPL LQQPPPPPSV SKAPPPPPPP PPPKSLSIAS AKVRRVPEVV EFYHSLMRRD STNSRRDSTG GGNAAAEAIL ANSNARDMIG 401: EIENRSVYLL AIKTDVETQG DFIRFLIKEV GNAAFSDIED VVPFVKWLDD ELSYLVDERA VLKHFEWPEQ KADALREAAF CYFDLKKLIS EASRFREDPR 501: QSSSSALKKM QALFEKLEHG VYSLSRMRES AATKFKSFQI PVDWMLETGI TSQIKLASVK LAMKYMKRVS AELEAIEGGG PEEEELIVQG VRFAFRVHQF 601: AGGFDAETMK AFEELRDKAR SCHVQCQSQT HQHKLCFRST PC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)