AT4G18530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.609 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF707) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G12840.2); Has 310 Blast hits to 308 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10217749..10220285 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45179.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQGSMNRSC LCSVLITTAL ICGAYFICNA YLAKDFKEKL LKWEITDKMH NSTDKMQNAT TTSTCKNFNK PVGTEALPQG IIEKTSNLET QHLWNYDDTK 101: KRRPNHSMSL LAMAVGIKQK ELVNKVIQKF PPRDFAVMLF HYDGVVDDWK QYPWNNHAIH VSVMNQTKWW FAKRFLHPDI VAEYEYIFLW DEDLGVGHFN 201: PQRYLSIVKE EGLEISQPAL DTSKSEVHHP ITARRKKSKV HRRMYKYKGS GRCDDHSTNP PCIGWVEMMA PVFSRAAWRC SWYMIQNDLI HAWGLDTQLG 301: YCAQGDRKKN VGVVDAEYII HYGLPTLGVV ETASSALRNE TDSKSTESLE SREVDNRPEV RMKSFVEMKR FKERWKKAVR DDTCWVDPY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)