suba logo
AT4G18450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 1 (TAIR:AT3G23240.1); Has 5532 Blast hits to 5448 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5521; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:12869eggNOG:ENOG410IX89eggNOG:ENOG410YSAIEMBL:AL021710
EMBL:AL161548EMBL:AY560868EMBL:CP002687EnsemblPlants:AT4G18450
EnsemblPlants:AT4G18450.1entrez:827576Gene3D:3.30.730.10GeneID:827576
Genevisible:O49515GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873GO:GO:0010200Gramene:AT4G18450.1
hmmpanther:PTHR31677hmmpanther:PTHR31677:SF16HOGENOM:HOG000241588InParanoid:O49515
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G18450OMA:EWTEILD
PaxDb:O49515Pfam:O49515Pfam:PF00847Pfscan:PS51032
PhylomeDB:O49515PIR:T04541PRIDE:O49515PRINTS:PR00367
PRO:PR:O49515PROSITE:PS51032ProteinModelPortal:O49515Proteomes:UP000006548
RefSeq:NP_193580.1SMART:SM00380SMR:O49515STRING:3702.AT4G18450.1
SUPFAM:SSF54171TAIR:AT4G18450UniGene:At.32901UniProt:O49515
Coordinates (TAIR10) chr4:-:10190250..10191161
Molecular Weight (calculated) 34496.30 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.69
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFGNIQELD GEILKNVWAN YIGTPQTDTR SIQVPEVSRT WEALPTLDDI PEGSREMLQS LDMSTEDQEW TEILDAIASF PNKTNHDPLT NPTIDSCSLS
101: SRVSCKTRKY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKAHTNFQLE TVIKAMEMDC NPNYYRMNNS NTSDPLRSSR
201: KIGLRTGKEA VKAYDEVVDG MVENHCALSY CSTKEHSETR GLRGSEETWF DLRKRRRSNE DSMCQEVEMQ KTVTGEETVC DVFGLFEFED LGSDYLETLL
301: SSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)