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AT4G18430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A1E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).
Protein Annotations
BioGrid:12867eggNOG:COG1100eggNOG:KOG0087EMBL:AL021710EMBL:AL161548EMBL:BT010933EMBL:BT011645
EMBL:CP002687EnsemblPlants:AT4G18430EnsemblPlants:AT4G18430.1entrez:827574Gene3D:3.40.50.300GeneID:827574Genevisible:O49513
GO:GO:0005525GO:GO:0005622GO:GO:0005886GO:GO:0007264GO:GO:0015031Gramene:AT4G18430.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF553HOGENOM:HOG000233968InParanoid:O49513InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417iPTMnet:O49513
KEGG:ath:AT4G18430OMA:VPPTMDGPaxDb:O49513Pfam:O49513Pfam:PF00071Pfscan:PS51419PhylomeDB:O49513
PIR:T04539PRIDE:O49513PRO:PR:O49513PROSITE:PS51419ProteinModelPortal:O49513Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_193578.1SMR:O49513STRING:3702.AT4G18430.1SUPFAM:SSF52540TAIR:AT4G18430tair10-symbols:AtRABA1etair10-symbols:RABA1e
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.27918UniProt:O49513
Coordinates (TAIR10) chr4:-:10183903..10185223
Molecular Weight (calculated) 24331.80 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.31
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAYRADDDY DYLFKLVLIG DSGVGKSNLL SRFTRNEFSI ESKSTIGVEF ATRSVHVDEK IIKAQLWDTA GQERYRAITS AYYRGAVGAL LVYDITRHIT
101: FENVERWLKE LRDHTDANVV IMLVGNKADL RHLRAVPTEE ARSFSERENM FFMETSALDA TNVEQAFTHV LTQIYRVMSR KALDGTGDPM SLPKGQTIDI
201: GNKDDVTAVK SSGCCSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)