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AT4G18390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (TCP2); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (TAIR:AT1G30210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12861eggNOG:ENOG410IVJNeggNOG:ENOG410YEYGEMBL:AF072691
EMBL:AF367270EMBL:AF367292EMBL:AL021710EMBL:AL161548
EMBL:AY084306EMBL:AY102141EMBL:CP002687EnsemblPlants:AT4G18390
EnsemblPlants:AT4G18390.1EnsemblPlants:AT4G18390.2entrez:827568GeneID:827568
Genevisible:Q93V43GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009637GO:GO:0009965
GO:GO:0030154GO:GO:0045962GO:GO:0048366GO:GO:1903508
GO:GO:2000306Gramene:AT4G18390.1Gramene:AT4G18390.2hmmpanther:PTHR31072
hmmpanther:PTHR31072:SF2HOGENOM:HOG000242136InParanoid:Q93V43InterPro:IPR005333
InterPro:IPR017887InterPro:IPR017888KEGG:ath:AT4G18390OMA:GHDHEAN
PaxDb:Q93V43Pfam:PF03634Pfam:Q93V43Pfscan:PS51369
Pfscan:PS51370PhylomeDB:Q93V43PIR:T04535PIR:T52249
PRIDE:Q93V43PRO:PR:Q93V43PROSITE:PS51369PROSITE:PS51370
ProteinModelPortal:Q93V43Proteomes:UP000006548RefSeq:NP_001078407.1RefSeq:NP_567553.1
STRING:3702.AT4G18390.1TAIR:AT4G18390tair10-symbols:TCP2UniGene:At.1934
UniGene:At.74874UniProt:Q93V43
Coordinates (TAIR10) chr4:-:10163212..10164309
Molecular Weight (calculated) 40180.70 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.91
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)