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AT4G18300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Trimeric LpxA-like enzyme
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1208eggNOG:KOG1461EMBL:AL021713EMBL:AL161548
EMBL:CP002687EnsemblPlants:AT4G18300EnsemblPlants:AT4G18300.1entrez:827556
Gene3D:1.25.40.180Gene3D:3.90.550.10GeneID:827556GO:GO:0003743
GO:GO:0016779Gramene:AT4G18300.1hmmpanther:PTHR22572hmmpanther:PTHR22572:SF7
HOGENOM:HOG000216610InterPro:IPR001451InterPro:IPR003307InterPro:IPR005835
InterPro:IPR016021InterPro:IPR016024InterPro:IPR029044KEGG:ath:AT4G18300
KO:K03240OMA:THEIQSSPfam:PF00132Pfam:PF00483
Pfam:PF02020Pfscan:PS51363PhylomeDB:O49733PIR:T04932
PROSITE:PS51363Proteomes:UP000006548Reactome:R-ATH-72731RefSeq:NP_193564.1
SMART:SM00515SMR:O49733STRING:3702.AT4G18300.1SUPFAM:SSF48371
SUPFAM:SSF53448TAIR:AT4G18300UniGene:At.54389UniProt:O49733
Coordinates (TAIR10) chr4:+:10118852..10120981
Molecular Weight (calculated) 79243.40 Da
IEP (calculated) 4.37
GRAVY (calculated) -0.28
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAQKKPAAA KVREDSEDLS RQRLQAILLA DSFTTQFRSI TLERPKVLLP IVNIPMIDYT LAWLESAGIE EVFVFCCAHS SQIIDYLKKS EWYTRPNPNL
101: LVRTIVSHNS TSVGDALRYI YEQQTETSQI QGDFVLVSGD TVSNMPLADL IQQHRDRKKK DEKAIMTMVF KKQSRLGIGS DQLFVAVDPL TKQLLHYEEC
201: NSRGGDFCLD KSLLDSTVLC SDMQDCYIDI CSPEVLSLFE DNFDYQHMRR HFVNGLLVDD IMGYKIFTHE IQSSCYAARI DNLRSYDTVS KDIIQRWTYP
301: YVPNIDFSGN RPVKLGRRGI YRASDAVQSH TADVGASTVI GYGTKIGNGG KIYNSVIGNG CCIGSNVVIQ GSYIWNNVTI EDGCEIRNAI VCDGVKVRAG
401: AVLQPGVVLS FSVVVGRDFV VPAYSKVSLL QQPTTEDSDE ELEYADSSSG TADHSSGLNN LQIESKASEL GPDGAGYIWE ICDSAHDEEW KHSVVPIPMD
501: KLADITGAMD DDDIEDDIVV PPSGELKSDT DIINTDANDS YGDFEREVEE EFLSAVEKDN KADIVIPLIN SHRLAYNMDS ADCAGAVFYS MMRLAVKSPH
601: NSATELYRNA MGVITKWKGV LGFYLKQTDA QIEVIMKFEE MCQESEELSP LFAKLLPFLY DKDVVQEDAI LRWGEEKAGA DDCDKVYLNK CESFIKWLKE
701: ASEEEEEDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)