suba logo
AT4G18280.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich cell wall protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich cell wall protein-related; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUNSeggNOG:ENOG41106Q1EMBL:CP002687EnsemblPlants:AT4G18280EnsemblPlants:AT4G18280.1entrez:827554GeneID:827554
Gramene:AT4G18280.1InParanoid:F4JQT4KEGG:ath:AT4G18280OMA:RHQMEEEPaxDb:F4JQT4Proteomes:UP000006548RefSeq:NP_567550.1
STRING:3702.AT4G18280.1TAIR:AT4G18280UniGene:At.28739UniProt:F4JQT4
Coordinates (TAIR10) chr4:+:10104082..10104555
Molecular Weight (calculated) 17639.00 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.06
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEESLEHLL MQPLPRLAQP KDPVVQVVQL MDLIGDIVGD GVQPREVVMA MVLVRVRHQM EEEKGLDSGL VRGQVQELDL GLAREEEEPQ TVVLAMEVGP
101: DTLVKAVAQE VEMVKDLLVV ERGANTAKRS FLVIITTLTQ SHMRKMIRLK EGKRKIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)